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v6.2.0

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Learn about vigilant mode 
chore(master): release 6.2.0 (#4120)

🤖 I have created a release *beep* *boop*
---


##
[6.2.0](v6.1.1...v6.2.0)
(2025-05-19)


### Features

* add aria2c wrapper
([#2725](#2725))
([a45763b](a45763b))
* bwameth mem and mem2
([#3728](#3728))
([63f5e87](63f5e87))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v6.1.1

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Learn about vigilant mode 
chore(master): release 6.1.1 (#4089)

🤖 I have created a release *beep* *boop*
---


##
[6.1.1](v6.1.0...v6.1.1)
(2025-05-16)


### Performance Improvements

* autobump bio/bbtools
([#4088](#4088))
([0449fb2](0449fb2))
* autobump bio/freebayes
([#4091](#4091))
([1a3246f](1a3246f))
* autobump bio/genomepy
([#4109](#4109))
([d28e8f4](d28e8f4))
* autobump bio/reference/ensembl-biomart-table
([#3348](#3348))
([668257f](668257f))
* autobump bio/sourmash/compute
([#4092](#4092))
([96c6e2f](96c6e2f))
* autobump bio/spades/metaspades
([#4093](#4093))
([f79580f](f79580f))
* autobump bio/subread/featurecounts
([#4094](#4094))
([547a927](547a927))
* autobump bio/taxonkit
([#4095](#4095))
([7e62290](7e62290))
* autobump bio/ucsc/bedGraphToBigWig
([#4110](#4110))
([53baae2](53baae2))
* autobump bio/unicycler
([#4096](#4096))
([5d13680](5d13680))
* autobump bio/varlociraptor/call-variants
([#4114](#4114))
([04b10f8](04b10f8))
* autobump bio/varlociraptor/control-fdr
([#4115](#4115))
([f0d85e2](f0d85e2))
* autobump bio/varlociraptor/estimate-alignment-properties
([#4113](#4113))
([71a2bed](71a2bed))
* autobump bio/varlociraptor/preprocess-variants
([#4117](#4117))
([985cdf9](985cdf9))
* autobump bio/vcftools/filter
([#4116](#4116))
([bd5d486](bd5d486))
* autobump bio/vep/annotate
([#4112](#4112))
([65b04c6](65b04c6))
* autobump bio/vep/cache
([#4111](#4111))
([3848d50](3848d50))
* autobump bio/vg/construct
([#4097](#4097))
([8913e45](8913e45))
* autobump bio/vg/ids
([#4101](#4101))
([6fc60ca](6fc60ca))
* autobump bio/vg/kmers
([#4102](#4102))
([3ed9484](3ed9484))
* autobump bio/vg/merge
([#4098](#4098))
([6030ce7](6030ce7))
* autobump bio/vg/prune
([#4100](#4100))
([bff067e](bff067e))
* autobump bio/vg/sim
([#4099](#4099))
([2ea8db2](2ea8db2))
* autobump utils/cairosvg
([#4107](#4107))
([7f6f15e](7f6f15e))
* autobump utils/datavzrd
([#4090](#4090))
([1f1edc0](1f1edc0))
* autobump utils/datavzrd
([#4108](#4108))
([f050aad](f050aad))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v6.1.0

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Learn about vigilant mode 
chore(master): release 6.1.0 (#4087)

🤖 I have created a release *beep* *boop*
---


##
[6.1.0](v6.0.2...v6.1.0)
(2025-05-08)


### Features

* update vg girrafe to 1.65.0
([#4085](#4085))
([69d61af](69d61af))


### Bug Fixes

* Fix doctest errors and build failure caused by snowballstemmer
([#4086](#4086))
([00412e1](00412e1))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v6.0.2

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Learn about vigilant mode 
chore(master): release 6.0.2 (#4038)

🤖 I have created a release *beep* *boop*
---


##
[6.0.2](v6.0.1...v6.0.2)
(2025-05-02)


### Performance Improvements

* autobump bio/bustools/count
([#4037](#4037))
([95c8497](95c8497))
* autobump bio/bustools/sort
([#4035](#4035))
([32ccc8a](32ccc8a))
* autobump bio/bustools/text
([#4036](#4036))
([1897a3b](1897a3b))
* autobump bio/freebayes
([#4040](#4040))
([d2967d9](d2967d9))
* autobump bio/freebayes
([#4048](#4048))
([4698130](4698130))
* autobump bio/gatk/applybqsr
([#4071](#4071))
([006f004](006f004))
* autobump bio/gatk/applybqsrspark
([#4077](#4077))
([9e9f99d](9e9f99d))
* autobump bio/gatk/applyvqsr
([#4069](#4069))
([52b8fe4](52b8fe4))
* autobump bio/gatk/baserecalibrator
([#4075](#4075))
([3a0a28d](3a0a28d))
* autobump bio/gatk/baserecalibratorspark
([#4082](#4082))
([023a266](023a266))
* autobump bio/gatk/calculatecontamination
([#4057](#4057))
([12077d7](12077d7))
* autobump bio/gatk/callcopyratiosegments
([#4068](#4068))
([f77af70](f77af70))
* autobump bio/gatk/cleansam
([#4052](#4052))
([b1b978e](b1b978e))
* autobump bio/gatk/collectalleliccounts
([#4060](#4060))
([8cf95c7](8cf95c7))
* autobump bio/gatk/collectreadcounts
([#4076](#4076))
([2a0352b](2a0352b))
* autobump bio/gatk/combinegvcfs
([#4058](#4058))
([d06a4cb](d06a4cb))
* autobump bio/gatk/denoisereadcounts
([#4056](#4056))
([5916cd0](5916cd0))
* autobump bio/gatk/depthofcoverage
([#4073](#4073))
([34f4250](34f4250))
* autobump bio/gatk/estimatelibrarycomplexity
([#4061](#4061))
([9184245](9184245))
* autobump bio/gatk/filtermutectcalls
([#4064](#4064))
([f16428d](f16428d))
* autobump bio/gatk/genomicsdbimport
([#4051](#4051))
([85187d8](85187d8))
* autobump bio/gatk/genotypegvcfs
([#4074](#4074))
([66d7223](66d7223))
* autobump bio/gatk/getpileupsummaries
([#4055](#4055))
([ae67a18](ae67a18))
* autobump bio/gatk/haplotypecaller
([#4054](#4054))
([056046f](056046f))
* autobump bio/gatk/intervallisttobed
([#4067](#4067))
([a8e8946](a8e8946))
* autobump bio/gatk/learnreadorientationmodel
([#4053](#4053))
([0277f44](0277f44))
* autobump bio/gatk/leftalignandtrimvariants
([#4072](#4072))
([681e71b](681e71b))
* autobump bio/gatk/markduplicatesspark
([#4070](#4070))
([91df6c2](91df6c2))
* autobump bio/gatk/modelsegments
([#4080](#4080))
([58700da](58700da))
* autobump bio/gatk/mutect
([#4066](#4066))
([3446daa](3446daa))
* autobump bio/gatk/printreadsspark
([#4063](#4063))
([1d4d052](1d4d052))
* autobump bio/gatk/scatterintervalsbyns
([#4059](#4059))
([4376cd0](4376cd0))
* autobump bio/gatk/selectvariants
([#4049](#4049))
([7b6a578](7b6a578))
* autobump bio/gatk/splitintervals
([#4065](#4065))
([14f2d1f](14f2d1f))
* autobump bio/gatk/splitncigarreads
([#4081](#4081))
([0ee053f](0ee053f))
* autobump bio/gatk/variantannotator
([#4078](#4078))
([b355de4](b355de4))
* autobump bio/gatk/varianteval
([#4062](#4062))
([bc67ec5](bc67ec5))
* autobump bio/gatk/variantfiltration
([#4050](#4050))
([98916ce](98916ce))
* autobump bio/gatk/variantrecalibrator
([#4079](#4079))
([6faba35](6faba35))
* autobump bio/gatk/variantstotable
([#4083](#4083))
([4e6286a](4e6286a))
* autobump bio/minimap2/aligner
([#4042](#4042))
([81e2033](81e2033))
* autobump bio/minimap2/index
([#4041](#4041))
([881d956](881d956))
* autobump bio/open-cravat/module
([#4044](#4044))
([5443274](5443274))
* autobump bio/open-cravat/run
([#4043](#4043))
([ec23c45](ec23c45))
* autobump bio/tximport
([#4045](#4045))
([3fc02ea](3fc02ea))
* autobump bio/ucsc/faToTwoBit
([#4084](#4084))
([62344c0](62344c0))
* autobump utils/datavzrd
([#4039](#4039))
([eceef36](eceef36))
* autobump utils/datavzrd
([#4047](#4047))
([5c76891](5c76891))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v6.0.1

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Learn about vigilant mode 
chore(master): release 6.0.1 (#4008)

🤖 I have created a release *beep* *boop*
---


##
[6.0.1](v6.0.0...v6.0.1)
(2025-04-18)


### Performance Improvements

* autobump bio/bwa-mem2/mem
([#4011](#4011))
([26427cf](26427cf))
* autobump bio/bwa-meme/mem
([#4010](#4010))
([9b29136](9b29136))
* autobump bio/bwa-memx/mem
([#4015](#4015))
([a3f052f](a3f052f))
* autobump bio/bwa/mem
([#4014](#4014))
([9893f31](9893f31))
* autobump bio/bwa/sampe
([#4012](#4012))
([20a4ea0](20a4ea0))
* autobump bio/bwa/samse
([#4013](#4013))
([460e426](460e426))
* autobump bio/bwa/samxe
([#4009](#4009))
([f8357cd](f8357cd))
* autobump bio/fastp
([#4016](#4016))
([32fb271](32fb271))
* autobump bio/picard/addorreplacereadgroups
([#4027](#4027))
([48b9bfb](48b9bfb))
* autobump bio/picard/bedtointervallist
([#4029](#4029))
([a49cf4d](a49cf4d))
* autobump bio/picard/collectalignmentsummarymetrics
([#4032](#4032))
([4282aa2](4282aa2))
* autobump bio/picard/collectgcbiasmetrics
([#4031](#4031))
([c4de167](c4de167))
* autobump bio/picard/collecthsmetrics
([#4021](#4021))
([82ed4fe](82ed4fe))
* autobump bio/picard/collectinsertsizemetrics
([#4020](#4020))
([9e30fc8](9e30fc8))
* autobump bio/picard/collectmultiplemetrics
([#4019](#4019))
([bdd6f41](bdd6f41))
* autobump bio/picard/collectrnaseqmetrics
([#4023](#4023))
([ce66ef8](ce66ef8))
* autobump bio/picard/collecttargetedpcrmetrics
([#4018](#4018))
([caa5ea3](caa5ea3))
* autobump bio/picard/createsequencedictionary
([#4028](#4028))
([bb47247](bb47247))
* autobump bio/picard/markduplicates
([#4025](#4025))
([fe41f5a](fe41f5a))
* autobump bio/picard/mergesamfiles
([#4026](#4026))
([e55dc7e](e55dc7e))
* autobump bio/picard/mergevcfs
([#4024](#4024))
([eda2889](eda2889))
* autobump bio/picard/revertsam
([#4022](#4022))
([7f9382b](7f9382b))
* autobump bio/picard/samtofastq
([#4030](#4030))
([ee1a07b](ee1a07b))
* autobump bio/picard/sortsam
([#4017](#4017))
([c987d49](c987d49))
* autobump bio/vg/giraffe
([#4033](#4033))
([f6560f0](f6560f0))
* autobump bio/whatshap/haplotag
([#4034](#4034))
([f6b55be](f6b55be))
* Update datavzrd wrapper to 2.53.1
([#4007](#4007))
([c7672a8](c7672a8))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v6.0.0

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Learn about vigilant mode 
chore(master): release 6.0.0 (#3975)

🤖 I have created a release *beep* *boop*
---


##
[6.0.0](v5.10.0...v6.0.0)
(2025-04-11)


### ⚠ BREAKING CHANGES

* bismark main alignment wrapper to best practices
([#3974](#3974))
* handle all the bismark_genome_preparation cli quirks
([#3973](#3973))

### Bug Fixes

* bismark main alignment wrapper to best practices
([#3974](#3974))
([b368e93](b368e93))
* handle all the bismark_genome_preparation cli quirks
([#3973](#3973))
([628d21c](628d21c))


### Performance Improvements

* autobump bio/bwa/mem
([#3982](#3982))
([1abfc8e](1abfc8e))
* autobump bio/deseq2/deseqdataset
([#3977](#3977))
([9988759](9988759))
* autobump bio/encode_fastq_downloader
([#3984](#3984))
([d551b05](d551b05))
* autobump bio/fgbio/annotatebamwithumis
([#3990](#3990))
([91a378d](91a378d))
* autobump bio/fgbio/callmolecularconsensusreads
([#3986](#3986))
([5c7cb57](5c7cb57))
* autobump bio/fgbio/collectduplexseqmetrics
([#3987](#3987))
([b8dfc5f](b8dfc5f))
* autobump bio/fgbio/filterconsensusreads
([#3988](#3988))
([0f528d6](0f528d6))
* autobump bio/fgbio/groupreadsbyumi
([#3989](#3989))
([3b72318](3b72318))
* autobump bio/fgbio/setmateinformation
([#3985](#3985))
([7e954b9](7e954b9))
* autobump bio/gatk3/baserecalibrator
([#3992](#3992))
([3ea92a0](3ea92a0))
* autobump bio/gatk3/indelrealigner
([#3994](#3994))
([18e0851](18e0851))
* autobump bio/gatk3/printreads
([#3991](#3991))
([b20391d](b20391d))
* autobump bio/gatk3/realignertargetcreator
([#3995](#3995))
([5fefdae](5fefdae))
* autobump bio/gdc-api/bam-slicing
([#3979](#3979))
([c32b1a8](c32b1a8))
* autobump bio/gseapy/gsea
([#3993](#3993))
([1f9f33c](1f9f33c))
* autobump bio/last/lastal
([#3996](#3996))
([e8d7aeb](e8d7aeb))
* autobump bio/last/lastdb
([#3997](#3997))
([d61ab4f](d61ab4f))
* autobump bio/mapdamage2
([#3998](#3998))
([427ef9e](427ef9e))
* autobump bio/mashmap
([#3999](#3999))
([6b383e4](6b383e4))
* autobump bio/pretext/graph
([#4001](#4001))
([65b6550](65b6550))
* autobump bio/salmon/decoys
([#4004](#4004))
([3f5049b](3f5049b))
* autobump bio/salmon/quant
([#4002](#4002))
([8ad15b9](8ad15b9))
* autobump bio/spades/metaspades
([#4003](#4003))
([48809df](48809df))
* autobump bio/sra-tools/fasterq-dump
([#3615](#3615))
([a24c7dd](a24c7dd))
* autobump bio/vep/plugins
([#4005](#4005))
([10fe869](10fe869))
* autobump bio/vg/giraffe
([#4006](#4006))
([0fff7ae](0fff7ae))
* autobump bio/whatshap/haplotag
([#3980](#3980))
([65b5db1](65b5db1))
* autobump utils/datavzrd
([#3978](#3978))
([1240480](1240480))
* autobump utils/datavzrd
([#3983](#3983))
([4637b4d](4637b4d))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v5.10.0

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Learn about vigilant mode 
chore(master): release 5.10.0 (#3738)

:robot: I have created a release *beep* *boop*
---


##
[5.10.0](https://github.com/snakemake/snakemake-wrappers/compare/v5.9.0...v5.10.0)
(2025-03-28)


### Features

* Add wrapper for miller
([#3850](https://github.com/snakemake/snakemake-wrappers/issues/3850))
([6e164d7](https://github.com/snakemake/snakemake-wrappers/commit/6e164d76ead1d27fed65319ca6f3475236ae4d44))
* use ensembl-sequence https download links, allow .gz output, check
links without downloading
([#3852](https://github.com/snakemake/snakemake-wrappers/issues/3852))
([7e90e8a](https://github.com/snakemake/snakemake-wrappers/commit/7e90e8aa583e291b645a4421a60d946c087e4055))


### Bug Fixes

* Adjust to new wrapper-utils
([#3849](https://github.com/snakemake/snakemake-wrappers/issues/3849))
([a107104](https://github.com/snakemake/snakemake-wrappers/commit/a10710483228fb16336b6a7fe9d2fd25c0a30ded))


### Performance Improvements

* autobump bio/arriba
([#3853](https://github.com/snakemake/snakemake-wrappers/issues/3853))
([7ec8701](https://github.com/snakemake/snakemake-wrappers/commit/7ec870166f9c2fc66551997556710ec2e935f1eb))
* autobump bio/bazam
([#3743](https://github.com/snakemake/snakemake-wrappers/issues/3743))
([9baf3d9](https://github.com/snakemake/snakemake-wrappers/commit/9baf3d95d55b8f2d405c47af1c811f2f15c20496))
* autobump bio/bazam
([#3872](https://github.com/snakemake/snakemake-wrappers/issues/3872))
([5c39df0](https://github.com/snakemake/snakemake-wrappers/commit/5c39df07f10f6bc3ec33f3dfbd31bd62738fef66))
* autobump bio/bbtools
([#3731](https://github.com/snakemake/snakemake-wrappers/issues/3731))
([ca38c0a](https://github.com/snakemake/snakemake-wrappers/commit/ca38c0a7f8d9e9bcd454f30731959ce73b44c3d9))
* autobump bio/bbtools
([#3876](https://github.com/snakemake/snakemake-wrappers/issues/3876))
([9795342](https://github.com/snakemake/snakemake-wrappers/commit/97953425a5d1bf944364ff550f54af87687203c4))
* autobump bio/bcftools/call
([#3746](https://github.com/snakemake/snakemake-wrappers/issues/3746))
([e4e2fba](https://github.com/snakemake/snakemake-wrappers/commit/e4e2fba6167499eee5c1a3dfefce8fa4d482fa04))
* autobump bio/bcftools/call
([#3868](https://github.com/snakemake/snakemake-wrappers/issues/3868))
([ae9403d](https://github.com/snakemake/snakemake-wrappers/commit/ae9403dcee74b61cee84cdd5b9910501d23a45db))
* autobump bio/bcftools/concat
([#3740](https://github.com/snakemake/snakemake-wrappers/issues/3740))
([6dbe722](https://github.com/snakemake/snakemake-wrappers/commit/6dbe7228e75aa2927bf42b9f821a872dbd3b2f95))
* autobump bio/bcftools/concat
([#3866](https://github.com/snakemake/snakemake-wrappers/issues/3866))
([e48207b](https://github.com/snakemake/snakemake-wrappers/commit/e48207b7f6e30585b1bdcade4c9b041736f9c8a0))
* autobump bio/bcftools/filter
([#3737](https://github.com/snakemake/snakemake-wrappers/issues/3737))
([2bc43be](https://github.com/snakemake/snakemake-wrappers/commit/2bc43be6648b260bb533890c62229585d8012b70))
* autobump bio/bcftools/filter
([#3860](https://github.com/snakemake/snakemake-wrappers/issues/3860))
([55a01ce](https://github.com/snakemake/snakemake-wrappers/commit/55a01ce124e8085d158ac6d18140154ae073368a))
* autobump bio/bcftools/index
([#3730](https://github.com/snakemake/snakemake-wrappers/issues/3730))
([b33e503](https://github.com/snakemake/snakemake-wrappers/commit/b33e503ba33c39c954d076529420bf4dab7dc533))
* autobump bio/bcftools/index
([#3858](https://github.com/snakemake/snakemake-wrappers/issues/3858))
([d096563](https://github.com/snakemake/snakemake-wrappers/commit/d096563f3bbdc42df344735670391cd2cd199ffb))
* autobump bio/bcftools/merge
([#3744](https://github.com/snakemake/snakemake-wrappers/issues/3744))
([28512b2](https://github.com/snakemake/snakemake-wrappers/commit/28512b25fcfd794c3d957d586219f4048be9ce26))
* autobump bio/bcftools/merge
([#3874](https://github.com/snakemake/snakemake-wrappers/issues/3874))
([53a4263](https://github.com/snakemake/snakemake-wrappers/commit/53a4263b92318b7d2c8d1ecaae0bcf6bfe3f90c4))
* autobump bio/bcftools/mpileup
([#3741](https://github.com/snakemake/snakemake-wrappers/issues/3741))
([b0ca3e9](https://github.com/snakemake/snakemake-wrappers/commit/b0ca3e9bdbfbee8a972fe56b7a3ed72ae18f2d90))
* autobump bio/bcftools/mpileup
([#3862](https://github.com/snakemake/snakemake-wrappers/issues/3862))
([532ecbe](https://github.com/snakemake/snakemake-wrappers/commit/532ecbe766b55ae1dfda388cf460bc32a9937423))
* autobump bio/bcftools/norm
([#3745](https://github.com/snakemake/snakemake-wrappers/issues/3745))
([96acc16](https://github.com/snakemake/snakemake-wrappers/commit/96acc16fa534c9670aa3b321bc9bacf6d9e38292))
* autobump bio/bcftools/norm
([#3867](https://github.com/snakemake/snakemake-wrappers/issues/3867))
([5aa7b0d](https://github.com/snakemake/snakemake-wrappers/commit/5aa7b0dcbc722c38e1c1bb251128628fca63d98b))
* autobump bio/bcftools/reheader
([#3732](https://github.com/snakemake/snakemake-wrappers/issues/3732))
([a686711](https://github.com/snakemake/snakemake-wrappers/commit/a6867116ce56e04b17febfd245fc081eed3ad805))
* autobump bio/bcftools/reheader
([#3871](https://github.com/snakemake/snakemake-wrappers/issues/3871))
([ce22ff0](https://github.com/snakemake/snakemake-wrappers/commit/ce22ff05cd86b2f8f1871615733393b2906873fe))
* autobump bio/bcftools/sort
([#3734](https://github.com/snakemake/snakemake-wrappers/issues/3734))
([eaf5c8c](https://github.com/snakemake/snakemake-wrappers/commit/eaf5c8c8d33f2dd40a6f68b16f1deec112906851))
* autobump bio/bcftools/sort
([#3863](https://github.com/snakemake/snakemake-wrappers/issues/3863))
([944727a](https://github.com/snakemake/snakemake-wrappers/commit/944727a3101e1c5f973b6f3756821f7a9590438e))
* autobump bio/bcftools/stats
([#3747](https://github.com/snakemake/snakemake-wrappers/issues/3747))
([2d5a32f](https://github.com/snakemake/snakemake-wrappers/commit/2d5a32f67de14e949a115634a3204c427354d38c))
* autobump bio/bcftools/stats
([#3869](https://github.com/snakemake/snakemake-wrappers/issues/3869))
([5e3a295](https://github.com/snakemake/snakemake-wrappers/commit/5e3a295feee9ba19168b67b2ad3d1822a73d51b5))
* autobump bio/bcftools/view
([#3748](https://github.com/snakemake/snakemake-wrappers/issues/3748))
([ae31135](https://github.com/snakemake/snakemake-wrappers/commit/ae31135ebce21694ac872d7a3aff9b380cf1cef2))
* autobump bio/bcftools/view
([#3855](https://github.com/snakemake/snakemake-wrappers/issues/3855))
([80cc06f](https://github.com/snakemake/snakemake-wrappers/commit/80cc06fdfefd77ac7096e590c908bf7d8c82acfb))
* autobump bio/bellerophon
([#3742](https://github.com/snakemake/snakemake-wrappers/issues/3742))
([ee2b2c9](https://github.com/snakemake/snakemake-wrappers/commit/ee2b2c9ce9a902b7e3af1c3137ae2e142df3a6b6))
* autobump bio/bellerophon
([#3865](https://github.com/snakemake/snakemake-wrappers/issues/3865))
([66b137d](https://github.com/snakemake/snakemake-wrappers/commit/66b137d3fe3587e6e07400ba7f803736d0042966))
* autobump bio/bowtie2/align
([#3733](https://github.com/snakemake/snakemake-wrappers/issues/3733))
([fc2fbe9](https://github.com/snakemake/snakemake-wrappers/commit/fc2fbe9edabbc1c618dafc846573bb14bb5f0a68))
* autobump bio/bowtie2/align
([#3854](https://github.com/snakemake/snakemake-wrappers/issues/3854))
([4df3d4d](https://github.com/snakemake/snakemake-wrappers/commit/4df3d4d4fb1b55aa7188cd87da0d93b398c0fd2d))
* autobump bio/bustools/sort
([#3739](https://github.com/snakemake/snakemake-wrappers/issues/3739))
([c2c7d4d](https://github.com/snakemake/snakemake-wrappers/commit/c2c7d4da079ac6d7a2eba0c7fd57103d0c69393e))
* autobump bio/bustools/sort
([#3877](https://github.com/snakemake/snakemake-wrappers/issues/3877))
([c07344b](https://github.com/snakemake/snakemake-wrappers/commit/c07344b517858fd34e2684f300178eec76356ce6))
* autobump bio/bwa-mem2/mem
([#3735](https://github.com/snakemake/snakemake-wrappers/issues/3735))
([65858e6](https://github.com/snakemake/snakemake-wrappers/commit/65858e6965a8fc7956ffb6192784d2a4dc87c810))
* autobump bio/bwa-mem2/mem
([#3861](https://github.com/snakemake/snakemake-wrappers/issues/3861))
([36aa434](https://github.com/snakemake/snakemake-wrappers/commit/36aa43432300d90578c443894569cfe33c992146))
* autobump bio/bwa/aln
([#3859](https://github.com/snakemake/snakemake-wrappers/issues/3859))
([5375694](https://github.com/snakemake/snakemake-wrappers/commit/537569423e03420d204449d621f5568551864ade))
* autobump bio/bwa/index
([#3856](https://github.com/snakemake/snakemake-wrappers/issues/3856))
([79eec23](https://github.com/snakemake/snakemake-wrappers/commit/79eec2332beee679ca4ef101a26b712aa9044782))
* autobump bio/bwa/mem
([#3736](https://github.com/snakemake/snakemake-wrappers/issues/3736))
([f57af1a](https://github.com/snakemake/snakemake-wrappers/commit/f57af1ac50c3a8035be397e67d61f904a2881497))
* autobump bio/bwa/mem
([#3857](https://github.com/snakemake/snakemake-wrappers/issues/3857))
([a529b48](https://github.com/snakemake/snakemake-wrappers/commit/a529b4843859a980cf9c4daa42d57c235dbf9980))
* autobump bio/bwa/mem-samblaster
([#3870](https://github.com/snakemake/snakemake-wrappers/issues/3870))
([fabd4dc](https://github.com/snakemake/snakemake-wrappers/commit/fabd4dc8ad142fed9213a70171bc477b524eb648))
* autobump bio/bwa/sampe
([#3873](https://github.com/snakemake/snakemake-wrappers/issues/3873))
([368923b](https://github.com/snakemake/snakemake-wrappers/commit/368923b3bc100543341a6f45be65549ee4150862))
* autobump bio/bwa/samse
([#3875](https://github.com/snakemake/snakemake-wrappers/issues/3875))
([a8d6613](https://github.com/snakemake/snakemake-wrappers/commit/a8d66136a9856e0fee29fd92ddabe850aad3caa2))
* autobump bio/bwa/samxe
([#3864](https://github.com/snakemake/snakemake-wrappers/issues/3864))
([c9b7084](https://github.com/snakemake/snakemake-wrappers/commit/c9b7084b647b91e8f47fc74362a8d9d9807df70f))
* autobump bio/delly
([#3749](https://github.com/snakemake/snakemake-wrappers/issues/3749))
([b4aac11](https://github.com/snakemake/snakemake-wrappers/commit/b4aac11001548c758b17da87c0f1b47fcf0e3d6f))
* autobump bio/delly
([#3878](https://github.com/snakemake/snakemake-wrappers/issues/3878))
([facbf0d](https://github.com/snakemake/snakemake-wrappers/commit/facbf0d0d0002ad66c0eb825c300e3b7c62ea9be))
* autobump bio/fastqc
([#3750](https://github.com/snakemake/snakemake-wrappers/issues/3750))
([69aaf50](https://github.com/snakemake/snakemake-wrappers/commit/69aaf503dfbcdaa0058e54970abe6a6989561146))
* autobump bio/fastqc
([#3881](https://github.com/snakemake/snakemake-wrappers/issues/3881))
([1ada09b](https://github.com/snakemake/snakemake-wrappers/commit/1ada09bf5a8fd0d4c11f114e823a0d9e234c6b70))
* autobump bio/fgbio/annotatebamwithumis
([#3751](https://github.com/snakemake/snakemake-wrappers/issues/3751))
([06e182e](https://github.com/snakemake/snakemake-wrappers/commit/06e182e8335b1847eaf4d014e228cdf6f3be4b65))
* autobump bio/fgbio/annotatebamwithumis
([#3879](https://github.com/snakemake/snakemake-wrappers/issues/3879))
([312407f](https://github.com/snakemake/snakemake-wrappers/commit/312407fe00fe076291df819bcecfb1d699938ad3))
* autobump bio/fgbio/collectduplexseqmetrics
([#3753](https://github.com/snakemake/snakemake-wrappers/issues/3753))
([f1f312b](https://github.com/snakemake/snakemake-wrappers/commit/f1f312b47c6cbda9bd550f028ec2fa78136ab2d9))
* autobump bio/fgbio/collectduplexseqmetrics
([#3882](https://github.com/snakemake/snakemake-wrappers/issues/3882))
([df0e3d9](https://github.com/snakemake/snakemake-wrappers/commit/df0e3d95ee0935ba813200f99b815094553569a2))
* autobump bio/freebayes
([#3752](https://github.com/snakemake/snakemake-wrappers/issues/3752))
([fec93ec](https://github.com/snakemake/snakemake-wrappers/commit/fec93ecfd08053995ce138cdc4ece64c9ff46473))
* autobump bio/freebayes
([#3880](https://github.com/snakemake/snakemake-wrappers/issues/3880))
([ad8beb7](https://github.com/snakemake/snakemake-wrappers/commit/ad8beb7ad28a6c227590c21ae3acefff5f6488c7))
* autobump bio/gatk/applybqsr
([#3789](https://github.com/snakemake/snakemake-wrappers/issues/3789))
([2df42c8](https://github.com/snakemake/snakemake-wrappers/commit/2df42c88f8c789edd2744be811f719a737e18a1f))
* autobump bio/gatk/applybqsr
([#3891](https://github.com/snakemake/snakemake-wrappers/issues/3891))
([318d910](https://github.com/snakemake/snakemake-wrappers/commit/318d910142369efa7c1d4151beef104c5f3ce688))
* autobump bio/gatk/applybqsrspark
([#3786](https://github.com/snakemake/snakemake-wrappers/issues/3786))
([eaeb766](https://github.com/snakemake/snakemake-wrappers/commit/eaeb76661cc53d90753e62219335a37eaee87ad6))
* autobump bio/gatk/applybqsrspark
([#3892](https://github.com/snakemake/snakemake-wrappers/issues/3892))
([2dd8a62](https://github.com/snakemake/snakemake-wrappers/commit/2dd8a6246c6d7ed52e17946ca0ab7ea4978f4015))
* autobump bio/gatk/applyvqsr
([#3779](https://github.com/snakemake/snakemake-wrappers/issues/3779))
([4043502](https://github.com/snakemake/snakemake-wrappers/commit/40435026ae20c80d00e923d9df24c7f3c4465ee0))
* autobump bio/gatk/applyvqsr
([#3900](https://github.com/snakemake/snakemake-wrappers/issues/3900))
([d85f1de](https://github.com/snakemake/snakemake-wrappers/commit/d85f1dea78a9499cfcd959fdb5a5cff9d23a5bac))
* autobump bio/gatk/baserecalibrator
([#3765](https://github.com/snakemake/snakemake-wrappers/issues/3765))
([c5914de](https://github.com/snakemake/snakemake-wrappers/commit/c5914decee54746b44badedd1c320dad50435ff6))
* autobump bio/gatk/baserecalibrator
([#3920](https://github.com/snakemake/snakemake-wrappers/issues/3920))
([a28ce95](https://github.com/snakemake/snakemake-wrappers/commit/a28ce95ee488eefdfe60bce824d09bfcc01c8b03))
* autobump bio/gatk/baserecalibratorspark
([#3763](https://github.com/snakemake/snakemake-wrappers/issues/3763))
([4c94008](https://github.com/snakemake/snakemake-wrappers/commit/4c94008a7043971cf2f8771977f86afea311e1ad))
* autobump bio/gatk/baserecalibratorspark
([#3893](https://github.com/snakemake/snakemake-wrappers/issues/3893))
([089945c](https://github.com/snakemake/snakemake-wrappers/commit/089945c75707c2cf4120c76ae7797325711c77f8))
* autobump bio/gatk/calculatecontamination
([#3757](https://github.com/snakemake/snakemake-wrappers/issues/3757))
([00044a0](https://github.com/snakemake/snakemake-wrappers/commit/00044a03f910fc4fb4b75c8a15c898db63555df6))
* autobump bio/gatk/calculatecontamination
([#3919](https://github.com/snakemake/snakemake-wrappers/issues/3919))
([fd5b543](https://github.com/snakemake/snakemake-wrappers/commit/fd5b543ba1dc252871c053e65a8a83582ccf8384))
* autobump bio/gatk/callcopyratiosegments
([#3790](https://github.com/snakemake/snakemake-wrappers/issues/3790))
([648f062](https://github.com/snakemake/snakemake-wrappers/commit/648f0629094b0a860a2fa1b5bfde5623fe67f10f))
* autobump bio/gatk/callcopyratiosegments
([#3888](https://github.com/snakemake/snakemake-wrappers/issues/3888))
([c5db836](https://github.com/snakemake/snakemake-wrappers/commit/c5db83666b32ca6cf8f49527c3cc40a68b31e79a))
* autobump bio/gatk/cleansam
([#3769](https://github.com/snakemake/snakemake-wrappers/issues/3769))
([5f9688b](https://github.com/snakemake/snakemake-wrappers/commit/5f9688b9afcb20c44da76db7b91cca6304200858))
* autobump bio/gatk/cleansam
([#3918](https://github.com/snakemake/snakemake-wrappers/issues/3918))
([4b77794](https://github.com/snakemake/snakemake-wrappers/commit/4b777944ec98981e81ffc4741775469e0fdb1c48))
* autobump bio/gatk/collectalleliccounts
([#3781](https://github.com/snakemake/snakemake-wrappers/issues/3781))
([6caceba](https://github.com/snakemake/snakemake-wrappers/commit/6caceba94f38b148eef10d8bc942b67259018e1d))
* autobump bio/gatk/collectalleliccounts
([#3883](https://github.com/snakemake/snakemake-wrappers/issues/3883))
([a0a64ac](https://github.com/snakemake/snakemake-wrappers/commit/a0a64ac6de6217c99e870e4e6e20ad0d6843de45))
* autobump bio/gatk/collectreadcounts
([#3782](https://github.com/snakemake/snakemake-wrappers/issues/3782))
([fc56c63](https://github.com/snakemake/snakemake-wrappers/commit/fc56c63f9b93e4feee27039c0f77d1e8c835e6fa))
* autobump bio/gatk/collectreadcounts
([#3907](https://github.com/snakemake/snakemake-wrappers/issues/3907))
([3d01586](https://github.com/snakemake/snakemake-wrappers/commit/3d015866f35d1d26e7ccd105d08dd37d99b50a53))
* autobump bio/gatk/combinegvcfs
([#3761](https://github.com/snakemake/snakemake-wrappers/issues/3761))
([9ac63dc](https://github.com/snakemake/snakemake-wrappers/commit/9ac63dc352c68a843df3d51ddd14875055ee268a))
* autobump bio/gatk/combinegvcfs
([#3908](https://github.com/snakemake/snakemake-wrappers/issues/3908))
([120a8cc](https://github.com/snakemake/snakemake-wrappers/commit/120a8cc0dbeddd081b61ead7f48eae5e277eb5df))
* autobump bio/gatk/denoisereadcounts
([#3792](https://github.com/snakemake/snakemake-wrappers/issues/3792))
([93b807f](https://github.com/snakemake/snakemake-wrappers/commit/93b807f787f3a6059030365729ea87724fef9ee9))
* autobump bio/gatk/denoisereadcounts
([#3915](https://github.com/snakemake/snakemake-wrappers/issues/3915))
([b79eb54](https://github.com/snakemake/snakemake-wrappers/commit/b79eb54a14c6f5affda8c1294165739351e1a1a9))
* autobump bio/gatk/depthofcoverage
([#3758](https://github.com/snakemake/snakemake-wrappers/issues/3758))
([0e77d4a](https://github.com/snakemake/snakemake-wrappers/commit/0e77d4af1699bdf4eee27f6eb7f45efe709b3bd3))
* autobump bio/gatk/depthofcoverage
([#3912](https://github.com/snakemake/snakemake-wrappers/issues/3912))
([efa4947](https://github.com/snakemake/snakemake-wrappers/commit/efa4947333a9ede8e0695eec36f3fc702cddc6e3))
* autobump bio/gatk/estimatelibrarycomplexity
([#3785](https://github.com/snakemake/snakemake-wrappers/issues/3785))
([e3c0f4d](https://github.com/snakemake/snakemake-wrappers/commit/e3c0f4d8c7ad00cd506c3cbb989ef1230fd02de3))
* autobump bio/gatk/estimatelibrarycomplexity
([#3894](https://github.com/snakemake/snakemake-wrappers/issues/3894))
([1f7c3fb](https://github.com/snakemake/snakemake-wrappers/commit/1f7c3fb69e19f458946bca32cae57125382ef6fd))
* autobump bio/gatk/filtermutectcalls
([#3777](https://github.com/snakemake/snakemake-wrappers/issues/3777))
([abe66bf](https://github.com/snakemake/snakemake-wrappers/commit/abe66bf65c07b8705e30f02dbbd9796b77217b91))
* autobump bio/gatk/filtermutectcalls
([#3921](https://github.com/snakemake/snakemake-wrappers/issues/3921))
([c864fb5](https://github.com/snakemake/snakemake-wrappers/commit/c864fb575c2a0aac436b695005892a4fc6c2331e))
* autobump bio/gatk/genomicsdbimport
([#3766](https://github.com/snakemake/snakemake-wrappers/issues/3766))
([b5e69fd](https://github.com/snakemake/snakemake-wrappers/commit/b5e69fd5863bab5da05b2028d859e0d44ca522aa))
* autobump bio/gatk/genomicsdbimport
([#3885](https://github.com/snakemake/snakemake-wrappers/issues/3885))
([acfa92c](https://github.com/snakemake/snakemake-wrappers/commit/acfa92c2c29cf7d62d68d6399cbc8fc7eb238f8b))
* autobump bio/gatk/genotypegvcfs
([#3759](https://github.com/snakemake/snakemake-wrappers/issues/3759))
([ddc9982](https://github.com/snakemake/snakemake-wrappers/commit/ddc9982652566841fdbe8fd406c5b92cd8ab8e57))
* autobump bio/gatk/genotypegvcfs
([#3914](https://github.com/snakemake/snakemake-wrappers/issues/3914))
([b34ab3e](https://github.com/snakemake/snakemake-wrappers/commit/b34ab3eaad309ee0b700dfadbe7e306246c6fbcb))
* autobump bio/gatk/getpileupsummaries
([#3772](https://github.com/snakemake/snakemake-wrappers/issues/3772))
([1d786be](https://github.com/snakemake/snakemake-wrappers/commit/1d786be3e196c9c06f3c8bda57750ed93858d187))
* autobump bio/gatk/getpileupsummaries
([#3887](https://github.com/snakemake/snakemake-wrappers/issues/3887))
([eb6cb22](https://github.com/snakemake/snakemake-wrappers/commit/eb6cb2235fffd65ad2a058d184add41ab7172736))
* autobump bio/gatk/haplotypecaller
([#3755](https://github.com/snakemake/snakemake-wrappers/issues/3755))
([5e31582](https://github.com/snakemake/snakemake-wrappers/commit/5e3158240e9835ab9d715274465caa03b4e86754))
* autobump bio/gatk/haplotypecaller
([#3904](https://github.com/snakemake/snakemake-wrappers/issues/3904))
([53e88e7](https://github.com/snakemake/snakemake-wrappers/commit/53e88e7e49c1373c965c0089cce6f0460fe5d564))
* autobump bio/gatk/intervallisttobed
([#3783](https://github.com/snakemake/snakemake-wrappers/issues/3783))
([9ffb1e3](https://github.com/snakemake/snakemake-wrappers/commit/9ffb1e3e59f6fab9faa5c8b16e3283b5acf26964))
* autobump bio/gatk/intervallisttobed
([#3909](https://github.com/snakemake/snakemake-wrappers/issues/3909))
([f01c21d](https://github.com/snakemake/snakemake-wrappers/commit/f01c21dd635f7447fbca4bf775c1b2b4657ebff2))
* autobump bio/gatk/learnreadorientationmodel
([#3775](https://github.com/snakemake/snakemake-wrappers/issues/3775))
([86ff7d9](https://github.com/snakemake/snakemake-wrappers/commit/86ff7d96827947b362cb58e5d51ab8f1f85cdf91))
* autobump bio/gatk/learnreadorientationmodel
([#3899](https://github.com/snakemake/snakemake-wrappers/issues/3899))
([a17e99e](https://github.com/snakemake/snakemake-wrappers/commit/a17e99e338c2e9d3335838e395355b62e4687fee))
* autobump bio/gatk/leftalignandtrimvariants
([#3788](https://github.com/snakemake/snakemake-wrappers/issues/3788))
([80f084b](https://github.com/snakemake/snakemake-wrappers/commit/80f084bc21d2c8d1e1a219ad5a8bc1742e752bc1))
* autobump bio/gatk/leftalignandtrimvariants
([#3903](https://github.com/snakemake/snakemake-wrappers/issues/3903))
([d529347](https://github.com/snakemake/snakemake-wrappers/commit/d529347238748122a5ded81400c5a65ca3ac1eb6))
* autobump bio/gatk/markduplicatesspark
([#3780](https://github.com/snakemake/snakemake-wrappers/issues/3780))
([345e72d](https://github.com/snakemake/snakemake-wrappers/commit/345e72df4070c23ccbc8b44f9645bf365f248e2f))
* autobump bio/gatk/markduplicatesspark
([#3896](https://github.com/snakemake/snakemake-wrappers/issues/3896))
([486848a](https://github.com/snakemake/snakemake-wrappers/commit/486848a7817b6c7015e8cf7f4a1e903ca383635f))
* autobump bio/gatk/modelsegments
([#3773](https://github.com/snakemake/snakemake-wrappers/issues/3773))
([17651f8](https://github.com/snakemake/snakemake-wrappers/commit/17651f839c605b21b8ec061fe40a2b8f862d8737))
* autobump bio/gatk/modelsegments
([#3916](https://github.com/snakemake/snakemake-wrappers/issues/3916))
([f179e03](https://github.com/snakemake/snakemake-wrappers/commit/f179e037fa09f5b92b5bfb83be811ed497b92198))
* autobump bio/gatk/mutect
([#3791](https://github.com/snakemake/snakemake-wrappers/issues/3791))
([4e0eb7c](https://github.com/snakemake/snakemake-wrappers/commit/4e0eb7c33b4d23775bb35370bc5e9aa3b99bd6fc))
* autobump bio/gatk/mutect
([#3895](https://github.com/snakemake/snakemake-wrappers/issues/3895))
([50941aa](https://github.com/snakemake/snakemake-wrappers/commit/50941aaa85bb404a683b1ec2748a1a3b72441790))
* autobump bio/gatk/printreadsspark
([#3754](https://github.com/snakemake/snakemake-wrappers/issues/3754))
([647559d](https://github.com/snakemake/snakemake-wrappers/commit/647559d774712d3fc38ec861e16a356e3b5543a6))
* autobump bio/gatk/printreadsspark
([#3911](https://github.com/snakemake/snakemake-wrappers/issues/3911))
([2261f18](https://github.com/snakemake/snakemake-wrappers/commit/2261f18d58d3ddbddd3590ed15ee5e0fc9ecaeb3))
* autobump bio/gatk/scatterintervalsbyns
([#3787](https://github.com/snakemake/snakemake-wrappers/issues/3787))
([4b5a7be](https://github.com/snakemake/snakemake-wrappers/commit/4b5a7be7a532482df74fe9e76b942ea01ff828d9))
* autobump bio/gatk/scatterintervalsbyns
([#3910](https://github.com/snakemake/snakemake-wrappers/issues/3910))
([8d3edd9](https://github.com/snakemake/snakemake-wrappers/commit/8d3edd9804e8b641017a83ca03e3e567d497c1eb))
* autobump bio/gatk/selectvariants
([#3764](https://github.com/snakemake/snakemake-wrappers/issues/3764))
([75451ed](https://github.com/snakemake/snakemake-wrappers/commit/75451ed5ae87dc13f6f06a979aa93382a24f0449))
* autobump bio/gatk/selectvariants
([#3902](https://github.com/snakemake/snakemake-wrappers/issues/3902))
([1bbd2ee](https://github.com/snakemake/snakemake-wrappers/commit/1bbd2ee9485bfb6b9d1a723965071e04bbe6f2a7))
* autobump bio/gatk/splitintervals
([#3776](https://github.com/snakemake/snakemake-wrappers/issues/3776))
([c8d7ee8](https://github.com/snakemake/snakemake-wrappers/commit/c8d7ee87b5de69641a5b475b39bbbbdcc0e474eb))
* autobump bio/gatk/splitintervals
([#3917](https://github.com/snakemake/snakemake-wrappers/issues/3917))
([6265c1f](https://github.com/snakemake/snakemake-wrappers/commit/6265c1f73039a046f594815a4c57c6570a39f14c))
* autobump bio/gatk/splitncigarreads
([#3762](https://github.com/snakemake/snakemake-wrappers/issues/3762))
([3efcbb9](https://github.com/snakemake/snakemake-wrappers/commit/3efcbb9f54f26c345a1d9dfb85ca834feb4cdf7e))
* autobump bio/gatk/splitncigarreads
([#3897](https://github.com/snakemake/snakemake-wrappers/issues/3897))
([d494927](https://github.com/snakemake/snakemake-wrappers/commit/d49492710e75f5c6a8ce7097d810ed04725f8b6d))
* autobump bio/gatk/variantannotator
([#3760](https://github.com/snakemake/snakemake-wrappers/issues/3760))
([020263a](https://github.com/snakemake/snakemake-wrappers/commit/020263adbb4f1b8f618a5160d9917d886d04d049))
* autobump bio/gatk/variantannotator
([#3913](https://github.com/snakemake/snakemake-wrappers/issues/3913))
([6a7360b](https://github.com/snakemake/snakemake-wrappers/commit/6a7360b5b033ec6ff421ca8dba46e7343d394034))
* autobump bio/gatk/varianteval
([#3784](https://github.com/snakemake/snakemake-wrappers/issues/3784))
([39c8120](https://github.com/snakemake/snakemake-wrappers/commit/39c8120fa82dea7f049287a7e3016284199ccc71))
* autobump bio/gatk/varianteval
([#3905](https://github.com/snakemake/snakemake-wrappers/issues/3905))
([966f40f](https://github.com/snakemake/snakemake-wrappers/commit/966f40ff6ae62a3f9a71b5ac6ada56a1d72fe0ce))
* autobump bio/gatk/variantfiltration
([#3768](https://github.com/snakemake/snakemake-wrappers/issues/3768))
([85fd0fa](https://github.com/snakemake/snakemake-wrappers/commit/85fd0fa8ec2e659d371aaf7ff2165fdf73261886))
* autobump bio/gatk/variantfiltration
([#3890](https://github.com/snakemake/snakemake-wrappers/issues/3890))
([6e86dd2](https://github.com/snakemake/snakemake-wrappers/commit/6e86dd2234ab2836cfa589246866ece29fc6c7c2))
* autobump bio/gatk/variantrecalibrator
([#3756](https://github.com/snakemake/snakemake-wrappers/issues/3756))
([c4a8b48](https://github.com/snakemake/snakemake-wrappers/commit/c4a8b489c401b032cebd6cf79b6b1b30645bb0fd))
* autobump bio/gatk/variantrecalibrator
([#3901](https://github.com/snakemake/snakemake-wrappers/issues/3901))
([8a1ac12](https://github.com/snakemake/snakemake-wrappers/commit/8a1ac12937e18b1821d01b5e439163561d48ba3d))
* autobump bio/gatk/variantstotable
([#3774](https://github.com/snakemake/snakemake-wrappers/issues/3774))
([7cb7f1d](https://github.com/snakemake/snakemake-wrappers/commit/7cb7f1d9c938545b43c2dedc4ac7251eb6846614))
* autobump bio/gatk/variantstotable
([#3889](https://github.com/snakemake/snakemake-wrappers/issues/3889))
([d370d2f](https://github.com/snakemake/snakemake-wrappers/commit/d370d2f44afd90ba58fec72339c649828c37f5ff))
* autobump bio/gatk3/baserecalibrator
([#3778](https://github.com/snakemake/snakemake-wrappers/issues/3778))
([1980153](https://github.com/snakemake/snakemake-wrappers/commit/19801539b464c58819a4be33c38af6fea597fcca))
* autobump bio/gatk3/baserecalibrator
([#3898](https://github.com/snakemake/snakemake-wrappers/issues/3898))
([97bd3cc](https://github.com/snakemake/snakemake-wrappers/commit/97bd3cc1e297b3d54e514b186a58f9c34af7ba6f))
* autobump bio/gatk3/indelrealigner
([#3771](https://github.com/snakemake/snakemake-wrappers/issues/3771))
([a1e67a2](https://github.com/snakemake/snakemake-wrappers/commit/a1e67a29fc2adbe2b914e3a47e8c6e93925005b0))
* autobump bio/gatk3/indelrealigner
([#3884](https://github.com/snakemake/snakemake-wrappers/issues/3884))
([33ead26](https://github.com/snakemake/snakemake-wrappers/commit/33ead26be9a08b3732d9d3b2495831012744ac39))
* autobump bio/gatk3/printreads
([#3767](https://github.com/snakemake/snakemake-wrappers/issues/3767))
([cb9df43](https://github.com/snakemake/snakemake-wrappers/commit/cb9df43cad1559eacc79c304c196b260b09dabe4))
* autobump bio/gatk3/printreads
([#3886](https://github.com/snakemake/snakemake-wrappers/issues/3886))
([d908bda](https://github.com/snakemake/snakemake-wrappers/commit/d908bda8a0394e57fa22a798816a254bbd99d2ac))
* autobump bio/gatk3/realignertargetcreator
([#3770](https://github.com/snakemake/snakemake-wrappers/issues/3770))
([87565e0](https://github.com/snakemake/snakemake-wrappers/commit/87565e0dc58257c1d581b5845951b99391a637a6))
* autobump bio/gatk3/realignertargetcreator
([#3906](https://github.com/snakemake/snakemake-wrappers/issues/3906))
([1a83bfc](https://github.com/snakemake/snakemake-wrappers/commit/1a83bfc3ebd263cad5781ae9e48905deec90bc4c))
* autobump bio/hifiasm
([#3793](https://github.com/snakemake/snakemake-wrappers/issues/3793))
([9c3172c](https://github.com/snakemake/snakemake-wrappers/commit/9c3172c62c8b2251d4787cc68f35f34955fa29e0))
* autobump bio/jannovar
([#3794](https://github.com/snakemake/snakemake-wrappers/issues/3794))
([2bad6c9](https://github.com/snakemake/snakemake-wrappers/commit/2bad6c9d4b4096403577cab1dc1954f15d8d2e2d))
* autobump bio/jannovar
([#3922](https://github.com/snakemake/snakemake-wrappers/issues/3922))
([f06da45](https://github.com/snakemake/snakemake-wrappers/commit/f06da45e1ab0c454e25c40612aafd09feaf28d85))
* autobump bio/last/lastal
([#3796](https://github.com/snakemake/snakemake-wrappers/issues/3796))
([f3d1c90](https://github.com/snakemake/snakemake-wrappers/commit/f3d1c90ac86ff367f3cb4f288cab0a8f4029ad15))
* autobump bio/last/lastdb
([#3795](https://github.com/snakemake/snakemake-wrappers/issues/3795))
([2b174e4](https://github.com/snakemake/snakemake-wrappers/commit/2b174e40c4b550e24bdf5942db687c38bf1afa05))
* autobump bio/meryl/count
([#3797](https://github.com/snakemake/snakemake-wrappers/issues/3797))
([7fb8353](https://github.com/snakemake/snakemake-wrappers/commit/7fb83534ef54bb82e5d7d81edf98a0ae2e94569e))
* autobump bio/meryl/count
([#3924](https://github.com/snakemake/snakemake-wrappers/issues/3924))
([4f3aee9](https://github.com/snakemake/snakemake-wrappers/commit/4f3aee9695556e1e19c7d62053d5a68ff32851c2))
* autobump bio/minimap2/aligner
([#3799](https://github.com/snakemake/snakemake-wrappers/issues/3799))
([c5fcf12](https://github.com/snakemake/snakemake-wrappers/commit/c5fcf12f7a0c61f9de156c3ea7cc9a0d82c8d77a))
* autobump bio/minimap2/aligner
([#3923](https://github.com/snakemake/snakemake-wrappers/issues/3923))
([68bef3e](https://github.com/snakemake/snakemake-wrappers/commit/68bef3ea29fe33f971fded33164a0dc4c58ce7a9))
* autobump bio/multiqc
([#3798](https://github.com/snakemake/snakemake-wrappers/issues/3798))
([120fd31](https://github.com/snakemake/snakemake-wrappers/commit/120fd310fc54a5480901e7a4fcc93c02a99eb466))
* autobump bio/multiqc
([#3925](https://github.com/snakemake/snakemake-wrappers/issues/3925))
([d583899](https://github.com/snakemake/snakemake-wrappers/commit/d583899e900182c4c986ac2d282ffa0daef5dc61))
* autobump bio/ngsbits/sampleancestry
([#3800](https://github.com/snakemake/snakemake-wrappers/issues/3800))
([afee343](https://github.com/snakemake/snakemake-wrappers/commit/afee343f9266562cf8631b63857b115b35e9ef70))
* autobump bio/ngsbits/samplesimilarity
([#3802](https://github.com/snakemake/snakemake-wrappers/issues/3802))
([69d01e6](https://github.com/snakemake/snakemake-wrappers/commit/69d01e60ce41d8c48cc23fec157130c86a06ec80))
* autobump bio/nonpareil/infer
([#3801](https://github.com/snakemake/snakemake-wrappers/issues/3801))
([6b24fea](https://github.com/snakemake/snakemake-wrappers/commit/6b24fea4a66b2673cb460d3d1d043a3dc41b5c90))
* autobump bio/nonpareil/infer
([#3926](https://github.com/snakemake/snakemake-wrappers/issues/3926))
([be3ed83](https://github.com/snakemake/snakemake-wrappers/commit/be3ed8340dbbbc50ce2a65b77b68d54eaf430423))
* autobump bio/picard/addorreplacereadgroups
([#3816](https://github.com/snakemake/snakemake-wrappers/issues/3816))
([1f3cc34](https://github.com/snakemake/snakemake-wrappers/commit/1f3cc34ffe61d1569bf260051e5d9496b988910d))
* autobump bio/picard/addorreplacereadgroups
([#3931](https://github.com/snakemake/snakemake-wrappers/issues/3931))
([6cee67d](https://github.com/snakemake/snakemake-wrappers/commit/6cee67d2b17ce6d6974f7799dc3ab5b773fc5881))
* autobump bio/picard/bedtointervallist
([#3819](https://github.com/snakemake/snakemake-wrappers/issues/3819))
([0a55f51](https://github.com/snakemake/snakemake-wrappers/commit/0a55f5129492b9bcee2d4b8f1dc235cc8ace5657))
* autobump bio/picard/bedtointervallist
([#3935](https://github.com/snakemake/snakemake-wrappers/issues/3935))
([94d95d5](https://github.com/snakemake/snakemake-wrappers/commit/94d95d5c62904ae5af47cd56a2212bf43d61104c))
* autobump bio/picard/collectalignmentsummarymetrics
([#3803](https://github.com/snakemake/snakemake-wrappers/issues/3803))
([7aff1f7](https://github.com/snakemake/snakemake-wrappers/commit/7aff1f7bf513944fc0af497c7c05b4b72d46f329))
* autobump bio/picard/collectalignmentsummarymetrics
([#3938](https://github.com/snakemake/snakemake-wrappers/issues/3938))
([1624eff](https://github.com/snakemake/snakemake-wrappers/commit/1624eff3a9be256a4197e18738ecb3324322bdda))
* autobump bio/picard/collectgcbiasmetrics
([#3817](https://github.com/snakemake/snakemake-wrappers/issues/3817))
([40ee060](https://github.com/snakemake/snakemake-wrappers/commit/40ee060815ab67fb206c529b4ef1e261c6d3dcfa))
* autobump bio/picard/collectgcbiasmetrics
([#3929](https://github.com/snakemake/snakemake-wrappers/issues/3929))
([9967769](https://github.com/snakemake/snakemake-wrappers/commit/996776933f4ffc57c202bef55c5d0a6016079c6b))
* autobump bio/picard/collecthsmetrics
([#3813](https://github.com/snakemake/snakemake-wrappers/issues/3813))
([c912647](https://github.com/snakemake/snakemake-wrappers/commit/c9126475e3788f534ee525a30e53f6a278a191aa))
* autobump bio/picard/collecthsmetrics
([#3944](https://github.com/snakemake/snakemake-wrappers/issues/3944))
([2fe40ff](https://github.com/snakemake/snakemake-wrappers/commit/2fe40ff834cba71de275b18c3b2f79fa6e0f1fe3))
* autobump bio/picard/collectinsertsizemetrics
([#3804](https://github.com/snakemake/snakemake-wrappers/issues/3804))
([716d024](https://github.com/snakemake/snakemake-wrappers/commit/716d02461fe5197087714ba8934770d92c58fe85))
* autobump bio/picard/collectinsertsizemetrics
([#3930](https://github.com/snakemake/snakemake-wrappers/issues/3930))
([c1c126d](https://github.com/snakemake/snakemake-wrappers/commit/c1c126da27c7b8a6315755a0441a52347b8b1ff3))
* autobump bio/picard/collectmultiplemetrics
([#3805](https://github.com/snakemake/snakemake-wrappers/issues/3805))
([a55b02d](https://github.com/snakemake/snakemake-wrappers/commit/a55b02dafe4339c2909930ac5a5e92b93791e08b))
* autobump bio/picard/collectmultiplemetrics
([#3939](https://github.com/snakemake/snakemake-wrappers/issues/3939))
([9d194e1](https://github.com/snakemake/snakemake-wrappers/commit/9d194e1906f329699d25c85bcf373844bcb25669))
* autobump bio/picard/collectrnaseqmetrics
([#3807](https://github.com/snakemake/snakemake-wrappers/issues/3807))
([1ba21db](https://github.com/snakemake/snakemake-wrappers/commit/1ba21dbad48783648729476571671e1f95e5066a))
* autobump bio/picard/collectrnaseqmetrics
([#3943](https://github.com/snakemake/snakemake-wrappers/issues/3943))
([523a749](https://github.com/snakemake/snakemake-wrappers/commit/523a74906d587fbb8554a794f9ea35c617246a2a))
* autobump bio/picard/collecttargetedpcrmetrics
([#3809](https://github.com/snakemake/snakemake-wrappers/issues/3809))
([9ea9326](https://github.com/snakemake/snakemake-wrappers/commit/9ea93266629cc65dfa270e18042c3709ee2f1453))
* autobump bio/picard/collecttargetedpcrmetrics
([#3942](https://github.com/snakemake/snakemake-wrappers/issues/3942))
([962fe69](https://github.com/snakemake/snakemake-wrappers/commit/962fe69686fe74662fd2a496a71ab1035c597e14))
* autobump bio/picard/createsequencedictionary
([#3814](https://github.com/snakemake/snakemake-wrappers/issues/3814))
([87dccdd](https://github.com/snakemake/snakemake-wrappers/commit/87dccdd0706ae6c7b5613adaf3289034c29646ce))
* autobump bio/picard/createsequencedictionary
([#3941](https://github.com/snakemake/snakemake-wrappers/issues/3941))
([98461e3](https://github.com/snakemake/snakemake-wrappers/commit/98461e3cc09d4bf876d4445519d803397b2d35a9))
* autobump bio/picard/markduplicates
([#3818](https://github.com/snakemake/snakemake-wrappers/issues/3818))
([c61a52d](https://github.com/snakemake/snakemake-wrappers/commit/c61a52d69ae8c359574c15ae96ad058468ceecab))
* autobump bio/picard/markduplicates
([#3933](https://github.com/snakemake/snakemake-wrappers/issues/3933))
([9b5b22b](https://github.com/snakemake/snakemake-wrappers/commit/9b5b22bc4e2fb6ade59b3398c71c9fda42c110aa))
* autobump bio/picard/mergesamfiles
([#3810](https://github.com/snakemake/snakemake-wrappers/issues/3810))
([c2d0fad](https://github.com/snakemake/snakemake-wrappers/commit/c2d0fad3cd7b17dc54d01c29472922c1dc1ee822))
* autobump bio/picard/mergesamfiles
([#3937](https://github.com/snakemake/snakemake-wrappers/issues/3937))
([ff23248](https://github.com/snakemake/snakemake-wrappers/commit/ff232480b3bc2e54e363b0682bcfe72654877f78))
* autobump bio/picard/mergevcfs
([#3808](https://github.com/snakemake/snakemake-wrappers/issues/3808))
([4ec6cf7](https://github.com/snakemake/snakemake-wrappers/commit/4ec6cf7c8b93276adf5a9bd6115c78b71cbc0695))
* autobump bio/picard/mergevcfs
([#3932](https://github.com/snakemake/snakemake-wrappers/issues/3932))
([d6e246a](https://github.com/snakemake/snakemake-wrappers/commit/d6e246adb96ae7a1edaa2e8ee9cced856c673871))
* autobump bio/picard/revertsam
([#3811](https://github.com/snakemake/snakemake-wrappers/issues/3811))
([0dfc61d](https://github.com/snakemake/snakemake-wrappers/commit/0dfc61d928f553490d82bbdaacb4da60f926de52))
* autobump bio/picard/revertsam
([#3940](https://github.com/snakemake/snakemake-wrappers/issues/3940))
([c5537ad](https://github.com/snakemake/snakemake-wrappers/commit/c5537ad49b51d602da6094737f366ea0a6000753))
* autobump bio/picard/samtofastq
([#3812](https://github.com/snakemake/snakemake-wrappers/issues/3812))
([92e9c33](https://github.com/snakemake/snakemake-wrappers/commit/92e9c3345c1bc55b6d50c691b6043889dcadac39))
* autobump bio/picard/samtofastq
([#3936](https://github.com/snakemake/snakemake-wrappers/issues/3936))
([c1d705e](https://github.com/snakemake/snakemake-wrappers/commit/c1d705efe01e3758ae716a479f0eccea1661d2aa))
* autobump bio/picard/sortsam
([#3806](https://github.com/snakemake/snakemake-wrappers/issues/3806))
([13c900c](https://github.com/snakemake/snakemake-wrappers/commit/13c900cd79836ac30ab9635d536a0daa38cb852a))
* autobump bio/picard/sortsam
([#3928](https://github.com/snakemake/snakemake-wrappers/issues/3928))
([7081256](https://github.com/snakemake/snakemake-wrappers/commit/708125618ac0c88f882dc20f80ac2b45aec32953))
* autobump bio/pretext/map
([#3815](https://github.com/snakemake/snakemake-wrappers/issues/3815))
([7c3c1ea](https://github.com/snakemake/snakemake-wrappers/commit/7c3c1ea92bfb478a81af6525eab8b7d7e77bc850))
* autobump bio/pretext/map
([#3934](https://github.com/snakemake/snakemake-wrappers/issues/3934))
([fe8fe04](https://github.com/snakemake/snakemake-wrappers/commit/fe8fe0488da1c1ff3f4bad782f490e7250cece0d))
* autobump bio/qualimap/bamqc
([#3820](https://github.com/snakemake/snakemake-wrappers/issues/3820))
([d76c976](https://github.com/snakemake/snakemake-wrappers/commit/d76c97681eb03751ae3ca1bb74cc93c30ec9d75b))
* autobump bio/qualimap/bamqc
([#3946](https://github.com/snakemake/snakemake-wrappers/issues/3946))
([b80c5f7](https://github.com/snakemake/snakemake-wrappers/commit/b80c5f7f4abd3fea19087ad173c3a72ca901026c))
* autobump bio/qualimap/rnaseq
([#3821](https://github.com/snakemake/snakemake-wrappers/issues/3821))
([0f8450e](https://github.com/snakemake/snakemake-wrappers/commit/0f8450e3fe8b5d872a0fd685ea4970ff1f6ec3a6))
* autobump bio/qualimap/rnaseq
([#3945](https://github.com/snakemake/snakemake-wrappers/issues/3945))
([09bad5e](https://github.com/snakemake/snakemake-wrappers/commit/09bad5e07fd69883bf9a6d269a92affad26cb528))
* autobump bio/samtools/calmd
([#3823](https://github.com/snakemake/snakemake-wrappers/issues/3823))
([e1f5c9b](https://github.com/snakemake/snakemake-wrappers/commit/e1f5c9b41300723bf053848ab8432845671dd931))
* autobump bio/samtools/calmd
([#3958](https://github.com/snakemake/snakemake-wrappers/issues/3958))
([fbca977](https://github.com/snakemake/snakemake-wrappers/commit/fbca977604f7b5544d8f2bdf1e188a178cb5ee40))
* autobump bio/samtools/collate
([#3842](https://github.com/snakemake/snakemake-wrappers/issues/3842))
([4186a1a](https://github.com/snakemake/snakemake-wrappers/commit/4186a1aa61f373038281e9a9ec50ed0a0b7575b4))
* autobump bio/samtools/collate
([#3967](https://github.com/snakemake/snakemake-wrappers/issues/3967))
([3a1372d](https://github.com/snakemake/snakemake-wrappers/commit/3a1372d3ac84660637310d809137cbaa1f6787ce))
* autobump bio/samtools/depth
([#3837](https://github.com/snakemake/snakemake-wrappers/issues/3837))
([f21fa98](https://github.com/snakemake/snakemake-wrappers/commit/f21fa98728ff2113df708897184d722d13bf9a0c))
* autobump bio/samtools/depth
([#3957](https://github.com/snakemake/snakemake-wrappers/issues/3957))
([beef4c3](https://github.com/snakemake/snakemake-wrappers/commit/beef4c3fd8173d530add7acc3d85b4b9aac68c21))
* autobump bio/samtools/faidx
([#3947](https://github.com/snakemake/snakemake-wrappers/issues/3947))
([7fd3ab7](https://github.com/snakemake/snakemake-wrappers/commit/7fd3ab7554b3dfe9073426ca6935373afe56b300))
* autobump bio/samtools/fastx
([#3829](https://github.com/snakemake/snakemake-wrappers/issues/3829))
([5922d23](https://github.com/snakemake/snakemake-wrappers/commit/5922d23f16c66ead863f2dd565a8f648e5dd55df))
* autobump bio/samtools/fastx
([#3961](https://github.com/snakemake/snakemake-wrappers/issues/3961))
([745eee6](https://github.com/snakemake/snakemake-wrappers/commit/745eee67c518400485f77b6894a2c077d31f3865))
* autobump bio/samtools/fixmate
([#3836](https://github.com/snakemake/snakemake-wrappers/issues/3836))
([3fa245d](https://github.com/snakemake/snakemake-wrappers/commit/3fa245de9eb677eb099d1d7d63b2140118f0ca7f))
* autobump bio/samtools/fixmate
([#3953](https://github.com/snakemake/snakemake-wrappers/issues/3953))
([96f5461](https://github.com/snakemake/snakemake-wrappers/commit/96f546117d9218feb9c2c0ff029aad5b163d2a82))
* autobump bio/samtools/flagstat
([#3825](https://github.com/snakemake/snakemake-wrappers/issues/3825))
([2740a36](https://github.com/snakemake/snakemake-wrappers/commit/2740a36c3097207a78a690d33002c5155575dfbc))
* autobump bio/samtools/flagstat
([#3948](https://github.com/snakemake/snakemake-wrappers/issues/3948))
([1c06065](https://github.com/snakemake/snakemake-wrappers/commit/1c06065454564975e5fb871c2d73099c709a0094))
* autobump bio/samtools/idxstats
([#3831](https://github.com/snakemake/snakemake-wrappers/issues/3831))
([8f28d20](https://github.com/snakemake/snakemake-wrappers/commit/8f28d20de027496cd504904b8998dbc1541901f5))
* autobump bio/samtools/idxstats
([#3949](https://github.com/snakemake/snakemake-wrappers/issues/3949))
([c347579](https://github.com/snakemake/snakemake-wrappers/commit/c347579ffa589de72818a71e7e3b097bf7633432))
* autobump bio/samtools/markdup
([#3833](https://github.com/snakemake/snakemake-wrappers/issues/3833))
([e441122](https://github.com/snakemake/snakemake-wrappers/commit/e441122a5458578005ccbeaf41979484f80933a7))
* autobump bio/samtools/markdup
([#3964](https://github.com/snakemake/snakemake-wrappers/issues/3964))
([a265cad](https://github.com/snakemake/snakemake-wrappers/commit/a265cade7413840e30221140f43c344ca64f1ba4))
* autobump bio/samtools/merge
([#3824](https://github.com/snakemake/snakemake-wrappers/issues/3824))
([9122aa6](https://github.com/snakemake/snakemake-wrappers/commit/9122aa6f559fdae0ab9e21b1176962293a4ac8f6))
* autobump bio/samtools/merge
([#3963](https://github.com/snakemake/snakemake-wrappers/issues/3963))
([f03129e](https://github.com/snakemake/snakemake-wrappers/commit/f03129e44fcf8f85fd53ef325383a2de43ad7dc3))
* autobump bio/samtools/sort
([#3834](https://github.com/snakemake/snakemake-wrappers/issues/3834))
([e50d526](https://github.com/snakemake/snakemake-wrappers/commit/e50d5263211676ba8b280fc0f3e7ef32c8c8bf52))
* autobump bio/samtools/sort
([#3962](https://github.com/snakemake/snakemake-wrappers/issues/3962))
([2fb9b1b](https://github.com/snakemake/snakemake-wrappers/commit/2fb9b1bd3cc7319366ad87f96d50b4b528e05794))
* autobump bio/samtools/stats
([#3840](https://github.com/snakemake/snakemake-wrappers/issues/3840))
([9258791](https://github.com/snakemake/snakemake-wrappers/commit/9258791c95ece508019bc824d02be426e0e19831))
* autobump bio/samtools/stats
([#3959](https://github.com/snakemake/snakemake-wrappers/issues/3959))
([003b958](https://github.com/snakemake/snakemake-wrappers/commit/003b95860a60ff166ddcb2128ee6b89be058b29b))
* autobump bio/samtools/view
([#3830](https://github.com/snakemake/snakemake-wrappers/issues/3830))
([844f0d3](https://github.com/snakemake/snakemake-wrappers/commit/844f0d36904b98bdb3458baeaf70c0e5f523b016))
* autobump bio/samtools/view
([#3956](https://github.com/snakemake/snakemake-wrappers/issues/3956))
([760051d](https://github.com/snakemake/snakemake-wrappers/commit/760051d913ca838d4e2e2934c7377aa35cee9f78))
* autobump bio/seqkit
([#3839](https://github.com/snakemake/snakemake-wrappers/issues/3839))
([be1abc4](https://github.com/snakemake/snakemake-wrappers/commit/be1abc4562acfe4e509f5d9e1e5dca8328a1c5bd))
* autobump bio/seqkit
([#3966](https://github.com/snakemake/snakemake-wrappers/issues/3966))
([1bc7066](https://github.com/snakemake/snakemake-wrappers/commit/1bc70667d8ec5e6ef2addca707b2d64f4bcb35fc))
* autobump bio/snpeff/annotate
([#3828](https://github.com/snakemake/snakemake-wrappers/issues/3828))
([efd75a5](https://github.com/snakemake/snakemake-wrappers/commit/efd75a56ff8f6f5c530e7a1fc30e20aa8ddc2acb))
* autobump bio/snpeff/annotate
([#3960](https://github.com/snakemake/snakemake-wrappers/issues/3960))
([7715759](https://github.com/snakemake/snakemake-wrappers/commit/7715759e756ee4b6ed93b6fa53a5b30d63fa7e46))
* autobump bio/snpeff/download
([#3838](https://github.com/snakemake/snakemake-wrappers/issues/3838))
([970cf05](https://github.com/snakemake/snakemake-wrappers/commit/970cf0533741ce6459bca791abc2edfe17ba116a))
* autobump bio/snpeff/download
([#3951](https://github.com/snakemake/snakemake-wrappers/issues/3951))
([8a43fbe](https://github.com/snakemake/snakemake-wrappers/commit/8a43fbedb11188bafb53e5754c835818ae38994a))
* autobump bio/snpsift/annotate
([#3832](https://github.com/snakemake/snakemake-wrappers/issues/3832))
([1403094](https://github.com/snakemake/snakemake-wrappers/commit/1403094378c84dbf3e1475b3b78fa4c5dcee0dd8))
* autobump bio/snpsift/annotate
([#3954](https://github.com/snakemake/snakemake-wrappers/issues/3954))
([d14d91a](https://github.com/snakemake/snakemake-wrappers/commit/d14d91ac6bd8357096c7726e5c86f0596578b8d0))
* autobump bio/snpsift/dbnsfp
([#3826](https://github.com/snakemake/snakemake-wrappers/issues/3826))
([a45e785](https://github.com/snakemake/snakemake-wrappers/commit/a45e7854ec83a7b3fe6cf6c63da4cfdeadb6838b))
* autobump bio/snpsift/dbnsfp
([#3952](https://github.com/snakemake/snakemake-wrappers/issues/3952))
([b7dbe2a](https://github.com/snakemake/snakemake-wrappers/commit/b7dbe2a00ce68be6f6b1c09785f00fc868c8da20))
* autobump bio/snpsift/genesets
([#3827](https://github.com/snakemake/snakemake-wrappers/issues/3827))
([4ac8750](https://github.com/snakemake/snakemake-wrappers/commit/4ac8750af4b6823305cafb8f810bd904909717dc))
* autobump bio/snpsift/genesets
([#3955](https://github.com/snakemake/snakemake-wrappers/issues/3955))
([04a3eee](https://github.com/snakemake/snakemake-wrappers/commit/04a3eee7ecd139da8e9f855a03db7cee4910a371))
* autobump bio/snpsift/gwascat
([#3822](https://github.com/snakemake/snakemake-wrappers/issues/3822))
([90b4d56](https://github.com/snakemake/snakemake-wrappers/commit/90b4d564f8c5bca2dc81da02a67c746494e1b90f))
* autobump bio/snpsift/gwascat
([#3950](https://github.com/snakemake/snakemake-wrappers/issues/3950))
([8508adf](https://github.com/snakemake/snakemake-wrappers/commit/8508adf18e88d03cc5a88cc59f7b744ff8711167))
* autobump bio/snpsift/varType
([#3835](https://github.com/snakemake/snakemake-wrappers/issues/3835))
([fe9b4c1](https://github.com/snakemake/snakemake-wrappers/commit/fe9b4c1d50e542a4b6effb3fad420fb2484885ea))
* autobump bio/snpsift/varType
([#3965](https://github.com/snakemake/snakemake-wrappers/issues/3965))
([2f69ff2](https://github.com/snakemake/snakemake-wrappers/commit/2f69ff207114055c436547e62449a6b3aeafa970))
* autobump bio/varscan/mpileup2indel
([#3845](https://github.com/snakemake/snakemake-wrappers/issues/3845))
([165aca6](https://github.com/snakemake/snakemake-wrappers/commit/165aca6757c2363a7baff6141f182ccb90064f04))
* autobump bio/varscan/mpileup2indel
([#3971](https://github.com/snakemake/snakemake-wrappers/issues/3971))
([93a6326](https://github.com/snakemake/snakemake-wrappers/commit/93a6326d724425851a79dc6d727fe2572544c93d))
* autobump bio/varscan/mpileup2snp
([#3846](https://github.com/snakemake/snakemake-wrappers/issues/3846))
([a8de859](https://github.com/snakemake/snakemake-wrappers/commit/a8de8599afc5ab96a5b83805b8c86f98974247e2))
* autobump bio/varscan/mpileup2snp
([#3970](https://github.com/snakemake/snakemake-wrappers/issues/3970))
([1b94cf9](https://github.com/snakemake/snakemake-wrappers/commit/1b94cf9fbee5b77240bfe9e5f1ecde3aa892d5e8))
* autobump bio/varscan/somatic
([#3847](https://github.com/snakemake/snakemake-wrappers/issues/3847))
([2ec0230](https://github.com/snakemake/snakemake-wrappers/commit/2ec02307b344f5858b30581dfdcfd3e4b37f0f1c))
* autobump bio/varscan/somatic
([#3969](https://github.com/snakemake/snakemake-wrappers/issues/3969))
([a5d7c3a](https://github.com/snakemake/snakemake-wrappers/commit/a5d7c3ae77c09ec5f1a1081acfe93cfda43766a2))
* autobump bio/vep/annotate
([#3848](https://github.com/snakemake/snakemake-wrappers/issues/3848))
([dce31fc](https://github.com/snakemake/snakemake-wrappers/commit/dce31fcda47426016172cad447131521594299df))
* autobump bio/vep/cache
([#3843](https://github.com/snakemake/snakemake-wrappers/issues/3843))
([654c195](https://github.com/snakemake/snakemake-wrappers/commit/654c1955410eabb06fe19fc8226dfed336b795ba))
* autobump bio/vg/giraffe
([#3844](https://github.com/snakemake/snakemake-wrappers/issues/3844))
([ae68740](https://github.com/snakemake/snakemake-wrappers/commit/ae68740d137b3ab268d7993f6445da7bf2d61d9d))
* autobump bio/vg/giraffe
([#3968](https://github.com/snakemake/snakemake-wrappers/issues/3968))
([436e23a](https://github.com/snakemake/snakemake-wrappers/commit/436e23a3b995972864ceb31f24bcd1b1bcdeb69c))
* autobump geo/overturemaps/download
([#3927](https://github.com/snakemake/snakemake-wrappers/issues/3927))
([a421631](https://github.com/snakemake/snakemake-wrappers/commit/a421631d6f37e619d2ce624718536b9a465c10a3))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

v5.9.0

Toggle v5.9.0's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode 
chore(master): release 5.9.0 (#3690)

🤖 I have created a release *beep* *boop*
---


##
[5.9.0](v5.8.3...v5.9.0)
(2025-03-14)


### Features

* add `overturemaps` cli wrapper
([#3689](#3689))
([f2e6355](f2e6355))
* add `pygadm` wrapper for geo spatial items
([#3711](#3711))
([c72eeb0](c72eeb0))
* Add jackhmmer wrapper from hmmer package.
([#3714](#3714))
([cef598e](cef598e))
* Bump meryl version
([#3727](#3727))
([cf6dd6c](cf6dd6c))
* grouping of wrappers and meta-wrappers by scientific field
([#3717](#3717))
([d3071e8](d3071e8))


### Bug Fixes

* switch-to-fine-grained-pat-for-release-please-prs
([#3712](#3712))
([3ee9f6e](3ee9f6e))


### Performance Improvements

* autobump bio/bbtools
([#3691](#3691))
([96efbe7](96efbe7))
* autobump bio/busco
([#3718](#3718))
([07bdd19](07bdd19))
* autobump bio/bwa/mem
([#3692](#3692))
([92caa80](92caa80))
* autobump bio/deseq2/deseqdataset
([#3693](#3693))
([8b68685](8b68685))
* autobump bio/fgbio/annotatebamwithumis
([#3698](#3698))
([530e379](530e379))
* autobump bio/fgbio/callmolecularconsensusreads
([#3697](#3697))
([4fd7929](4fd7929))
* autobump bio/fgbio/collectduplexseqmetrics
([#3699](#3699))
([eff79ba](eff79ba))
* autobump bio/fgbio/filterconsensusreads
([#3696](#3696))
([8a908b1](8a908b1))
* autobump bio/fgbio/groupreadsbyumi
([#3695](#3695))
([46404bb](46404bb))
* autobump bio/fgbio/setmateinformation
([#3700](#3700))
([1860fd7](1860fd7))
* autobump bio/gseapy/gsea
([#3701](#3701))
([5107aa1](5107aa1))
* autobump bio/last/lastal
([#3722](#3722))
([2fa082b](2fa082b))
* autobump bio/last/lastdb
([#3721](#3721))
([144cc02](144cc02))
* autobump bio/picard/collectinsertsizemetrics
([#3703](#3703))
([8572022](8572022))
* autobump bio/reference/ensembl-mysql-table
([#3724](#3724))
([20c3ff3](20c3ff3))
* autobump bio/seqkit
([#3725](#3725))
([f30e212](f30e212))
* autobump bio/taxonkit
([#3726](#3726))
([a63d5a6](a63d5a6))
* autobump bio/tximport
([#3704](#3704))
([650ed53](650ed53))
* autobump bio/ucsc/gtfToGenePred
([#3705](#3705))
([1fdb394](1fdb394))
* autobump bio/varlociraptor/call-variants
([#3710](#3710))
([c3f4e44](c3f4e44))
* autobump bio/varlociraptor/control-fdr
([#3707](#3707))
([8ca4adb](8ca4adb))
* autobump bio/varlociraptor/estimate-alignment-properties
([#3708](#3708))
([d42def9](d42def9))
* autobump bio/varlociraptor/preprocess-variants
([#3709](#3709))
([134d1e5](134d1e5))
* autobump bio/vg/giraffe
([#3706](#3706))
([5d06651](5d06651))
* autobump geo/overturemaps/download
([#3702](#3702))
([9b06df4](9b06df4))
* autobump geo/pygadm/item
([#3723](#3723))
([069069a](069069a))
* autobump utils/csvtk
([#3719](#3719))
([78f51eb](78f51eb))
* autobump utils/datavzrd
([#3694](#3694))
([63328e6](63328e6))
* autobump utils/datavzrd
([#3720](#3720))
([5fcc5ec](5fcc5ec))
* don't run code quality checks if only `CHANGELOG.md` modified
([#3713](#3713))
([edb8130](edb8130))

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[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: snakemake-bot <[email protected]>

v5.8.3

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Learn about vigilant mode 
chore(master): release 5.8.3 (#3660)

🤖 I have created a release *beep* *boop*
---


##
[5.8.3](v5.8.2...v5.8.3)
(2025-02-28)


### Performance Improvements

* autobump bio/bbtools
([#3659](#3659))
([99627cd](99627cd))
* autobump bio/deseq2/deseqdataset
([#3661](#3661))
([197fd03](197fd03))
* autobump bio/encode_fastq_downloader
([#3662](#3662))
([122357c](122357c))
* autobump bio/freebayes
([#3663](#3663))
([e3a5db8](e3a5db8))
* autobump bio/freebayes
([#3678](#3678))
([857a6a6](857a6a6))
* autobump bio/gatk3/baserecalibrator
([#3667](#3667))
([66f9de6](66f9de6))
* autobump bio/gatk3/indelrealigner
([#3666](#3666))
([93e5b2a](93e5b2a))
* autobump bio/gatk3/printreads
([#3668](#3668))
([01cfd61](01cfd61))
* autobump bio/gatk3/realignertargetcreator
([#3665](#3665))
([a2e96f7](a2e96f7))
* autobump bio/gdc-api/bam-slicing
([#3664](#3664))
([29630a8](29630a8))
* autobump bio/mapdamage2
([#3669](#3669))
([9927c87](9927c87))
* autobump bio/pbmm2/align
([#3680](#3680))
([e40ca42](e40ca42))
* autobump bio/pbmm2/index
([#3679](#3679))
([ac321c1](ac321c1))
* autobump bio/pretext/graph
([#3681](#3681))
([912e6e7](912e6e7))
* autobump bio/spades/metaspades
([#3670](#3670))
([904029a](904029a))
* autobump bio/spades/metaspades
([#3682](#3682))
([87cc122](87cc122))
* autobump bio/tximport
([#3671](#3671))
([d4a9711](d4a9711))
* autobump bio/unicycler
([#3683](#3683))
([b7b13be](b7b13be))
* autobump bio/varlociraptor/call-variants
([#3677](#3677))
([f3de829](f3de829))
* autobump bio/varlociraptor/control-fdr
([#3672](#3672))
([642f774](642f774))
* autobump bio/varlociraptor/estimate-alignment-properties
([#3673](#3673))
([32b55ac](32b55ac))
* autobump bio/varlociraptor/preprocess-variants
([#3675](#3675))
([2c75e84](2c75e84))
* autobump bio/vep/plugins
([#3674](#3674))
([44d1bf1](44d1bf1))
* autobump bio/vsearch
([#3676](#3676))
([53609c7](53609c7))
* autobump bio/vsearch
([#3684](#3684))
([7c99545](7c99545))

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This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

v5.8.2

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Learn about vigilant mode 
chore(master): release 5.8.2 (#3658)

🤖 I have created a release *beep* *boop*
---


##
[5.8.2](v5.8.1...v5.8.2)
(2025-02-18)


### Performance Improvements

* Update datavzrd wrapper to 2.52.0
([#3657](#3657))
([53abd72](53abd72))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>