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Snakemake based Data-Science project template based on drivendata.github.io/cookiecutter-data-science/

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Cookiecutter Data Science (cds)

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Requirements to use the cookiecutter template:


  • Python 3
  • Cookiecutter Python package >= 1.4.0: This can be installed with pip by or conda depending on how you manage your Python packages:
$ pip install cookiecutter

or

$ conda config --add channels conda-forge
$ conda install cookiecutter

To start a new project, run:


cookiecutter https://github.com/verginer/cds

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Snakemake based Data-Science project template based on drivendata.github.io/cookiecutter-data-science/

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  • Python 45.7%
  • Makefile 36.6%
  • Batchfile 17.7%