Java Research Software for Linux

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Browse free open source Java Research Software for Linux and projects below. Use the toggles on the left to filter open source Java Research Software for Linux by OS, license, language, programming language, and project status.

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  • 1
    DSpace

    DSpace

    Open Source "turn-key" institutional repository application

    Open Source Digital Asset Management system that enables services for access, provision, stewardship and re-use of digital assets with a focus on educational and research materials For Support, please see: https://wiki.lyrasis.org/display/DSPACE/Support RELEASES: The most recent releases are now distributed via GitHub: https://github.com/DSpace/DSpace/releases MAILING LISTS: Mailing lists have all been moved to Google Groups: https://wiki.lyrasis.org/display/DSPACE/Mailing+Lists
    Downloads: 29 This Week
    Last Update:
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  • 2
    JaCoP
    JaCoP is a Java Constraint Programming solver. It provides a significant number of (global) constraints to facilitate efficient modeling of combinatorial problems, as well as modular design of search. Documentation is available at project Web site. Please, note that the sources from version 4.0 are only available at GitHub.
    Downloads: 30 This Week
    Last Update:
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  • 3
    Hypernomicon

    Hypernomicon

    Hypertext-infused philosophy personal database software

    Hypernomicon is a personal productivity/database application for researchers that combines structured note-taking, mind-mapping, management of files (e.g., PDFs) and folders, and reference management into an integrated environment that organizes all of the above into semantic networks or hierarchies in terms of debates, positions, arguments, labels, terminology/concepts, and user-defined keywords by means of database relations and automatically generated hyperlinks (hence ‘Hyper’ in the name). Hypernomicon keeps track of all these things in a highly structured, thoroughly indexed and user friendly relational database, automatically generates semantic hyperlinks between all of them, and presents this information in many different forms so that you are constantly informed of ways all of your information is related that you had not realized.
    Downloads: 16 This Week
    Last Update:
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  • 4

    Docear

    An Academic Literature Suite

    Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology and developed by scientists from around the world, among others from OvGU, and the University of California, Berkeley.
    Downloads: 3 This Week
    Last Update:
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  • 5
    choco
    Choco is not hosted on sourceforge anymore. Please now visit http://choco-solver.org/ !
    Downloads: 3 This Week
    Last Update:
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  • 6
    jMIR

    jMIR

    Music research software

    jMIR is an open-source software suite implemented in Java for use in music information retrieval (MIR) research. It can be used to study music in the form of audio recordings, symbolic encodings and lyrical transcriptions, and can also mine cultural information from the Internet. It also includes tools for managing and profiling large music collections and for checking audio for production errors. jMIR includes software for extracting features, applying machine learning algorithms, applying heuristic error error checkers, mining metadata and analyzing metadata.
    Downloads: 4 This Week
    Last Update:
    See Project
  • 7
    This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).
    Downloads: 4 This Week
    Last Update:
    See Project
  • 8
    Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.
    Downloads: 2 This Week
    Last Update:
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  • 9

    EasyCSP

    Constraint Satisfaction Problem solving library for Java

    EasyCSP is an open-source Java library for Constraint Satisfaction Programming. EasyCSP offers search algorithms for both CSPs and CSOPs. EasyCSP supports CSPs to be formalized using objects or int expressions. EasyCSP on GitHub: http://github.com/cordisvictor/easycsp-lib
    Downloads: 1 This Week
    Last Update:
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  • 10
    MolMarker

    MolMarker

    Java software to evaluate the results obtained by molecular markers

    Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices and UPGMA or NJ dendograms. It can calculate the frequencies of null alleles in the case of genetic data as well as H (heterosigosity) and PIC (polymorphic Information Content) values. Parentage analyses gives a list of possible parent-offspring combinations, and likelihood ratio statistics corresponding to the detected combinations. For details see MolMarker Manual.pdf
    Downloads: 1 This Week
    Last Update:
    See Project
  • 11
    S-Match

    S-Match

    S-Match is a semantic matching framework.

    S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration, ontology evolution and alignment, peer-to-peer information sharing, digital libraries integration, web service composition, agent communication, and query answering on the web. S-Match is extendable to host new algorithms.
    Downloads: 1 This Week
    Last Update:
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  • 12
    This is a FreeCell solitaire game solver written in the Java. It is fast and capable - it solves all of the first million Microsoft deals in about 4 hours - 99.99% of them in less than a second, and no deal takes more than 1 minute.
    Downloads: 1 This Week
    Last Update:
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  • 13
    Implicit Graph Search Library
    Java generic API for search algorithms on graphs implicitly given by tree node expansion operator
    Downloads: 1 This Week
    Last Update:
    See Project
  • 14

    Navmol

    Molecular structure navigator for Blind and Visually Impaired people

    Navmol is a software that allows people that are blind or visually impaired to navigate and edit molecular structures in a simple and intuitive way.
    Downloads: 1 This Week
    Last Update:
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  • 15
    jmathstudio - Java Image/Signal toolkit

    jmathstudio - Java Image/Signal toolkit

    Java toolkit for discrete Image and Signal processing.

    JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/
    Downloads: 1 This Week
    Last Update:
    See Project
  • 16
    Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
    Downloads: 0 This Week
    Last Update:
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  • 17
    Bracer

    Bracer

    Repository has been moved to: http://dtitov.github.com/bracer

    Java library for parsing and evaluating math expressions. Javadoc is available at http://bracer.sourceforge.net/javadoc/ P.S. This library depends on Apache Commons Math, so don't forget to include commons-math-2.2.jar to your project.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 18
    This is a Content Based Image Retrieval Interface with only color features implemented. This is part of a thesis work to analyze the different color features and observe the performance on mainly corel5k images.
    Downloads: 0 This Week
    Last Update:
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  • 19
    Ceka

    Ceka

    Crowd Environment and its Knowledge Analysis

    A knowledge analysis tool for crowdsourcing based on Weka. We also have a Python version of Crowdsourcing Learning: CrowdwiseKit on GitHub (https://github.com/tssai-lab/CrowdwiseKit).
    Downloads: 0 This Week
    Last Update:
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  • 20
    Centre d'informations (CI)

    Centre d'informations (CI)

    Not a search engine but navigation routes within a research domain.

    The Centre d'Informations (CI) aim is to articulate and display whatever type of knowledge available on a given field (see screenshots examples for various fields). The software is built as a network of information articulated using concepts (figure). The website should not be understood as a conventional search engine but as different ways to navigate within this knowledge (information and concept) network. Each information is thoroughly formalized; the aim is not exhaustivity or information amount but rather information quality so as to ensure the best possible articulation within the existing network (quality of the network) and ensure the subject diversity so as to cover the field with robustness.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 21
    Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .
    Downloads: 0 This Week
    Last Update:
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  • 22

    Conway's Game Of Life

    A simple Java class for Conway's Game of Life

    See http://en.wikipedia.org/wiki/Conway%27s_Game_of_Life for the rules of the game.
    Downloads: 0 This Week
    Last Update:
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  • 23
    Damon
    Damon is a Distributed AOP Middleware on top of a p2p Overlay Network. Its main aim is to offer the necessary abstractions and services to develop distributed aspects, and to provide scalability to existent or new applications transparently.
    Downloads: 0 This Week
    Last Update:
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  • 24
    A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.
    Downloads: 0 This Week
    Last Update:
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  • 25

    EV3-JavaBrick

    ROS node to control LEGO MINDSTORMS EV3

    - Java SE 1.7 compatible - Can be run on both Windows/Linux PC - Can be run on Android devices(Tested on ASUS fonetab7, ASUS zenfone4, Samsung Galaxy S4) - Can be run on reflashed ARM-based AndroidTV sticks (Tested on MK808) - No custom firmware for EV3 brick - Supports about 15 EV3/NXT/HT sensors - Supports EV3 & NXT motors - Supports Android camera
    Downloads: 0 This Week
    Last Update:
    See Project
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