Open Source Java Scientific/Engineering Software

Browse free open source Java Scientific/Engineering Software and projects below. Use the toggles on the left to filter open source Java Scientific/Engineering Software by OS, license, language, programming language, and project status.

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  • 1
    Grassroots DICOM

    Grassroots DICOM

    Cross-platform DICOM implementation

    Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
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    Downloads: 282 This Week
    Last Update:
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  • 2
    Systems Biology Markup Language (SBML)

    Systems Biology Markup Language (SBML)

    A file format for exchanging computational models in systems biology

    The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
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    Downloads: 51 This Week
    Last Update:
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  • 3
    KMLCSV Converter
    Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.
    Downloads: 43 This Week
    Last Update:
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  • 4
    openLCA

    openLCA

    professional open source software for LCA

    Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments.
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    Downloads: 38 This Week
    Last Update:
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  • 5
    GeoWebCache

    GeoWebCache

    GWC is a tile server and caching proxy written in Java

    GeoWebCache is a WMS tile cache that lets you serve cached map data to WMS clients, Goole Earth, Google Maps and MS Virtual Earth. The system is pluggable on both ends and does automatic matching to the best available tile. It is very fast and scalable.
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    Downloads: 91 This Week
    Last Update:
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  • 6

    picard

    A set of tools for working with high-throughput sequencing data

    A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team
    Downloads: 16 This Week
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  • 7
    The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
    Downloads: 18 This Week
    Last Update:
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  • 8
    JabRef

    JabRef

    JabRef is a graphical application for managing bibliographical data

    JabRef is a graphical application for managing bibliographical databases. JabRef is designed specifically for BibTeX bases, but can import and export many other bibliographic formats. JabRef runs on all platforms and requires Java 1.8 or newer.
    Downloads: 13 This Week
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  • 9
    ProM is the comprehensive, extensible framework for process mining. Process Mining deals with the a-posteriori analysis of (business) processes using enactment logs.
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    Downloads: 40 This Week
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  • 10
    Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all
    Downloads: 36 This Week
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  • 11
    Jitterbit is an open source integration tool that delivers a quick and simple way to design, configure, test, and deploy integration solutions. It supports many document types and protocols: XML, web services, database, LDAP, text, FTP, HTTP(S), file
    Downloads: 19 This Week
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  • 12
    HL7 Inspector

    HL7 Inspector

    HL7 Inspector is a tool for managing HL7 messages

    The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com
    Downloads: 8 This Week
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  • 13
    gpstools
    GPSdings (project name GPStools) is a set of free applications that let you manipulate and analyse GPS data from the command line.
    Downloads: 9 This Week
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  • 14
    The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
    Downloads: 6 This Week
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  • 15
    Observation Manager
    Java based astronomical logging software which stores it's data in a free and open XML based format (OpenAstronomyLog). Discontinued project: Please check out the fork: https://github.com/capape/observation-manager for an updated version
    Downloads: 3 This Week
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  • 16
    MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded
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    Downloads: 9 This Week
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  • 17
    javahexeditor Java Hex Editor

    javahexeditor Java Hex Editor

    A hex editor Eclipse plugin and multi-platform desktop application

    You can install the latest Eclipse plugin version from the update site https://javahexeditor.sourceforge.io/update or the Eclipse Marketplace https://marketplace.eclipse.org/content/java-hex-editor. Older versions of the Eclipse plugin are available via the update site for the version, e.g. https://javahexeditor.sourceforge.io/update/0.5.1 You can download the latest stand-alone version and older versions on the "Files" tab.
    Downloads: 5 This Week
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  • 18
    JSDAI is a toolkit for STEP (ISO 10303), the STandard for the Exchange of Product Model data, that enables linking of CAD, CAM, PDM, PLM, CAx systems. JSDAI supports the development of Express data models (ISO 10303-11) and their implementation in Java.
    Downloads: 8 This Week
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  • 19
    DragMath is a drag and drop equation editor in the form of a Java applet. Once an expression is created the user can convert it into a variety of different linear syntax for mathematics, including MathML, LaTeX, Maple, Maxima or any user defined style. PLEASE NOTE: active code development has moved to GitHub. https://github.com/maths/dragmath
    Downloads: 3 This Week
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  • 20
    JavaSeis
    JavaSeis.org: Java based software for processing and storing petroleum industry seismic data.
    Downloads: 5 This Week
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  • 21
    A real-time graph plotter. While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.
    Downloads: 1 This Week
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  • 22
    Java Marine API

    Java Marine API

    NMEA 0183 library for Java

    Java Marine API is an NMEA 0183 library for Java. For furher info and latest source code, see project's Github pages. http://github.com/ktuukkan/marine-api/
    Downloads: 1 This Week
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  • 23
    This project provides and open source implementation of HELD and related specifications. A HELD client and Location Information Server are included.
    Downloads: 3 This Week
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  • 24
    TER implements the CCSDS Recommendation for Image Data Compression (CCSDS 122.0-B-1). TER also adds new features to the Recommendation. TER is designed and programmed with the aim to provide a good basis to test and develop the CCSDS Recommendation.
    Downloads: 3 This Week
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  • 25
    This is a parser in Java for Lisp S-expressions. An S-expression or sexp (for symbolic expression) is a convention for representing data using parentheses.
    Downloads: 3 This Week
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