Search Results for "em clustering algorithm"

This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.

The Stanford Machine Learning Course Exercises repository contains programming assignments from the well-known Stanford Machine Learning online course. It includes implementations of a variety of fundamental algorithms using Python and MATLAB/Octave. The repository covers a broad set of topics such as linear regression, logistic regression, neural networks, clustering, support vector machines, and recommender systems. Each folder corresponds to a specific algorithm or concept, making it easy...