Open Source Python Data Integration Tools for Mac

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O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de dados e a possibilidade de realizar buscas semânticas no conjunto de dados armazenados, sem a necessidade de elaborar expressões lógicas de busca.

CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types.

Dagster is an orchestration platform for the development, production, and observation of data assets. Dagster as a productivity platform: With Dagster, you can focus on running tasks, or you can identify the key assets you need to create using a declarative approach. Embrace CI/CD best practices from the get-go: build reusable components, spot data quality issues, and flag bugs early. Dagster as a robust orchestration engine: Put your pipelines into production with a robust multi-tenant, multi-tool engine that scales technically and organizationally. Dagster as a unified control plane: The ‘single plane of glass’ data teams love to use. Rein in the chaos and maintain control over your data as the complexity scales. Centralize your metadata in one tool with built-in observability, diagnostics, cataloging, and lineage. Spot any issues and identify performance improvement opportunities.

This package contains a lightweight data transformation framework with a focus on transparency and complexity reduction. Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. GNU make semantics. Nodes depend on the completion of upstream nodes. No data dependencies or data flows. No in-app data processing: command line tools as the main tool for interacting with databases and data. Single machine pipeline execution based on Python's multiprocessing. No need for distributed task queues. Easy debugging and output logging. Cost based priority queues: nodes with higher cost (based on recorded run times) are run first.

A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining

Recap is a schema language and multi-language toolkit to track and transform schemas across your whole application. Your data passes through web services, databases, message brokers, and object stores. Recap describes these schemas in a single language, regardless of which system your data passes through. Recap schemas can be defined in YAML, TOML, JSON, XML, or any other compatible language.

Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq.

Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.