Open Source Python Data Visualization Software - Page 2

Python Data Visualization Software

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Browse free open source Python Data Visualization Software and projects below. Use the toggles on the left to filter open source Python Data Visualization Software by OS, license, language, programming language, and project status.

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  • 1
    BertViz

    BertViz

    BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

    BertViz is an interactive tool for visualizing attention in Transformer language models such as BERT, GPT2, or T5. It can be run inside a Jupyter or Colab notebook through a simple Python API that supports most Huggingface models. BertViz extends the Tensor2Tensor visualization tool by Llion Jones, providing multiple views that each offer a unique lens into the attention mechanism. The head view visualizes attention for one or more attention heads in the same layer. It is based on the excellent Tensor2Tensor visualization tool. The model view shows a bird's-eye view of attention across all layers and heads. The neuron view visualizes individual neurons in the query and key vectors and shows how they are used to compute attention.
    Downloads: 4 This Week
    Last Update:
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  • 2
    PyMOL Molecular Graphics System

    PyMOL Molecular Graphics System

    PyMOL is an OpenGL based molecular visualization system

    The Open-Source PyMOL repository has been moved to github: https://github.com/schrodinger/pymol-open-source We still use the pymol-users mailing list here on sourceforge. Please subscribe for community support: https://pymol.org/maillist (Note: SourceForge email newsletter and special offers are optional and can be unchecked) The PyMOL community wiki has its own home: https://pymolwiki.org/
    Downloads: 94 This Week
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  • 3
    QtiPlot
    QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
    Downloads: 87 This Week
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  • 4
    Bayesian Optimization

    Bayesian Optimization

    Python implementation of global optimization with gaussian processes

    This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. Follow the basic tour notebook to learn how to use the package's most important features. Take a look at the advanced tour notebook to learn how to make the package more flexible, how to deal with categorical parameters, how to use observers, and more. Explore the options exemplifying the balance between exploration and exploitation and how to control it. Explore the domain reduction notebook to learn more about how search can be sped up by dynamically changing parameters' bounds.
    Downloads: 3 This Week
    Last Update:
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  • 5
    classic.tplx

    classic.tplx

    A more accurate representation of jupyter notebooks

    A more accurate representation of Jupyter notebooks when converting to pdfs. This template was designed to make converted Jupyter notebooks look (almost) identical to the actual notebook. If something doesn't exist in the original notebook then it doesn't belong in the conversion. As of nbconvert 5.5.0, the majority of these improvements have been merged into nbconvert's default template. Version 3.x of this package will continue to support nbconvert 5.5.0 and lower, whereas in the future version 4.x will only support nbconvert 5.5.0 and newer. Versions 3.x, and 4.x will overlap support for nbconvert version 5.5.0.
    Downloads: 3 This Week
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  • 6
    Open Dynamics Engine
    A free, industrial quality library for simulating articulated rigid body dynamics - for example ground vehicles, legged creatures, and moving objects in VR environments. It's fast, flexible & robust. Built-in collision detection.
    Downloads: 15 This Week
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  • 7
    XCSoar

    XCSoar

    ... the open-source glide computer

    XCSoar is a tactical glide computer for Android, Linux, macOS, and Windows.
    Downloads: 18 This Week
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  • 8
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A comprehensive analysis results in summary tables (in plain text, tab-separated, and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research.
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    Downloads: 66 This Week
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  • 9
    GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
    Downloads: 16 This Week
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  • 10
    GemGIS

    GemGIS

    Spatial data processing for geomodeling

    GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export from GemPy to geoinformation systems such as QGIS and ArcGIS or to Google Earth for further use.
    Downloads: 2 This Week
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  • 11
    PyVista

    PyVista

    3D plotting and mesh analysis through a streamlined interface

    3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK). PyVista is a helper module for the Visualization Toolkit (VTK) that takes a different approach on interfacing with VTK through NumPy and direct array access. This package provides a Pythonic, well-documented interface exposing VTK’s powerful visualization backend to facilitate rapid prototyping, analysis, and visual integration of spatially referenced datasets. This module can be used for scientific plotting for presentations and research papers as well as a supporting module for other mesh-dependent Python modules. Easily integrate with NumPy and create a variety of geometries and plot them. You could use any geometry to create your glyphs, or even plot the points directly. Direct access to mesh analysis and transformation routines. Intuitive plotting routines with matplotlib similar syntax.
    Downloads: 2 This Week
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  • 12
    geemap

    geemap

    A Python package for interactive geospaital analysis and visualization

    A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. GEE provides both JavaScript and Python APIs for making computational requests to the Earth Engine servers. Compared with the comprehensive documentation and interactive IDE (i.e., GEE JavaScript Code Editor) of the GEE JavaScript API, the GEE Python API has relatively little documentation and limited functionality for visualizing results interactively. The geemap Python package was created to fill this gap.
    Downloads: 2 This Week
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  • 13
    GPlates

    GPlates

    Interactive visualization of plate tectonics.

    GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts.
    Downloads: 11 This Week
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  • 14
    UPDATE: Chromium is no longer updated or maintained. The project is frozen. Chromium is a flexible framework for scalable real-time rendering on clusters of workstations, derived from the Stanford WireGL project code base.
    Downloads: 7 This Week
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  • 15
    RPy (R from Python)
    RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions).
    Downloads: 6 This Week
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  • 16
    JILL.py

    JILL.py

    A cross-platform installer for the Julia programming language

    The enhanced Python fork of JILL, Julia Installer for Linux (and every other platform), Light.
    Downloads: 1 This Week
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  • 17
    Jupytab

    Jupytab

    Display in Tableau data from Jupyter notebooks

    Jupytab allows you to explore in Tableau data which is generated dynamically by a Jupyter Notebook. You can thus create Tableau data sources in a very flexible way using all the power of Python. This is achieved by having Tableau access data through a web server created by Jupytab.
    Downloads: 1 This Week
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  • 18
    Run Page

    Run Page

    Make your own running home page

    GitHub Actions manages automatic synchronization of runs and generation of new pages. Gatsby-generated static pages, fast. Support for Vercel (recommended) and GitHub Pages automated deployment. React Hooks. Mapbox for map display. Supports most sports apps such as nike strava. Automatically backup gpx data for easy backup and uploading to other software.
    Downloads: 1 This Week
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  • 19
    ipycytoscape

    ipycytoscape

    A Cytoscape Jupyter widget

    A widget enabling interactive graph visualization with cytoscape.js in JupyterLab and the Jupyter Notebook.
    Downloads: 1 This Week
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  • 20
    miepython

    miepython

    Mie scattering of light by perfect spheres

    miepython is a pure Python module to calculate light scattering for non-absorbing, partially-absorbing, or perfectly-conducting spheres. Mie theory is used, following the procedure described by Wiscombe. This code has been validated against his results. This code provides functions for calculating the extinction efficiency, scattering efficiency, backscattering, and scattering asymmetry. Moreover, a set of angles can be given to calculate the scattering for a sphere at each of those angles.
    Downloads: 1 This Week
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  • 21
    pydna

    pydna

    Clone with Python! Data structures for double stranded DNA

    Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which allow for simulation and verification. Pydna can be used as executable documentation for cloning.
    Downloads: 1 This Week
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  • 22
    The Python Computer Graphics Kit is a collection of Python modules that contain the basic types and functions to be able to create 3D computer graphics images (focusing on Pixar's RenderMan interface).
    Downloads: 8 This Week
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  • 23
    Mantid
    Mantid Project (www.mantidproject.org)
    Downloads: 22 This Week
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  • 24

    VPython

    This project is no longer active. See vpython.org.

    This project is no longer active. See vpython.org.
    Downloads: 6 This Week
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  • 25
    Make sure to download from the link below and not the big giant button. I'm not sure how to fix that, so if you know!
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    Downloads: 20 This Week
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