Open Source Python Data Visualization Software - Page 5

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

Simplified interface to the Augmented Reality library ARToolKit for Python and other programming languages.

Agaseous-NES is a graphic app for creating integrated circuit layers. Developers can import Agaseous for SuperWikia Alpha .AJA (Agaseous Joint Application) text files to automate & create asauna plates. Also imports and intergrate Adobe .PSD files.

BLIX is a cross-platform set of Python extension modules and Python scripts for Blender (www.blender.org). These scripts add camera calibration, 3D reconstruction and rigid body orientation to Blender.

The aim of this project is to translate the geostatistical BMELib Matlab Toolbox (http://www.unc.edu/depts/case/BMELIB/) into Python.

An Open Source IEC 61131-3 Integrated Development Environment, providing PLCOpen SoftPLC programming, CanOpen IO's, and SVG based HMI.

Booleans all meshes on the screen. Plus: A fractal generator and attractor generator with a delicious SEARCH function ;) <meta name="google-site-verification" content="cULQewNGfx-aXCQR9fTJZ1Z7DXbLA5GjqjvAfF_oH5I" />

Using Blender3D as an interface for NC Simulation and Visualization

Bloxs is a simple Python package that helps you display information in an attractive way (formed in blocks). Perfect for building dashboards, reports and apps in the notebook.

Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material.

COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies.

CairoPlot is a Python module to plot graphics in an easy and intuitive way, creating beautiful results for presentations, websites and reports.

Cellicone is a project to develop an artificial life organism with the necessary components to make it comparable to biological life as we know it. This includes components ranging from proteins to cells to organs to limbs, and many steps between.

Chartshare is a computer based system for the production, analysis, and distribution of Standard Celeration Charts (http://www.celeration.org).

The co-simulation adapation platform serves as programming framework and middleware to enable coupling of distributed, heterogeneous numerical models. The framework facilitates the adaptation and integration of new sub-models into a common simulation platform.

CollectD-CSV Plotter is a web interface for fetching and visualizing data that is saved in CollectD CSV format. An HTML form is used for defining the time interval and choosing the wanted measurements. The plotter is actually a front-end for collectd-csv module (http://pypi.python.org/pypi/collectd-csv/), which it uses for fetching the data. Technologies CollectD-CSV Plotter uses include CGI/Python, HTML5/JavaScript, jQuery, jQuery-UI and Gnuplot.

Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.

Data logger, manipulator and visualizer. Receives data in CSV format from stdio.

Software written in Python to take oscilloscope data for a data transmit channel and a data clock as inputs, and output an eye diagram. The eye diagram helps evaluate the quality of the transmit data.

DeepH-pack is the official implementation of the DeepH (Deep Hamiltonian) method described in the paper Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation and in the Research Briefing. DeepH-pack supports DFT results made by ABACUS, OpenMX, FHI-aims or SIESTA and will support HONPAS.

Django-dataplot enables developers using the Django web framework to seamlessly integrate data-driven graphical plots into their web pages.

A 3D data visualization tool, specializing in the display of robotically collected point, range, and volumetric data. Provides a very flexible framework for different file formats and visualization parameters.

This program will open an ELINT Time-Based Data (TBD) file and plot it for purposes of measurement and analysis. Test files included. New ver 0.4 added 2018-01-01.