Skip to content
@ArcInstitute

Arc Research Institute

Popular repositories Loading

  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2.9k 316

  2. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 313 32

  3. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 105 7

  4. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 102 14

  5. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 90 20

  6. binseq binseq Public

    A high efficiency binary format for sequencing data

    Rust 59 5

Repositories

Showing 10 of 25 repositories
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 102 14 17 4 Updated Jun 26, 2025
  • cell-load Public

    dataloaders for state-sets models

    ArcInstitute/cell-load’s past year of commit activity
    Python 5 MIT 1 7 2 Updated Jun 26, 2025
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 17 MIT 2 3 0 Updated Jun 26, 2025
  • xsra Public

    An efficient CLI to extract sequences from the SRA

    ArcInstitute/xsra’s past year of commit activity
    Rust 105 7 3 0 Updated Jun 25, 2025
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 20 1 3 0 Updated Jun 23, 2025
  • state-reproduce Public

    Reproduce analyses and baselines from the State-Sets paper

    ArcInstitute/state-reproduce’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 23, 2025
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 2,885 Apache-2.0 315 20 4 Updated Jun 20, 2025
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 3 MIT 0 2 0 Updated Jun 18, 2025
  • SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    ArcInstitute/SRAgent’s past year of commit activity
    Python 90 MIT 20 1 0 Updated Jun 12, 2025
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 59 5 3 0 Updated May 22, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…