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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 7.6k 2.2k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 229

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 224 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 249 77

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 150 40

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 613 116

Repositories

Showing 10 of 107 repositories
  • study-monitoring-kaapana Public
    MIC-DKFZ/study-monitoring-kaapana’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Nov 10, 2025
  • computing_membrane_property_extraction Public
    MIC-DKFZ/computing_membrane_property_extraction’s past year of commit activity
    Python 0 0 0 0 Updated Nov 10, 2025
  • ViData Public
    MIC-DKFZ/ViData’s past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Nov 6, 2025
  • ContrastiveVirtualStaining Public
    MIC-DKFZ/ContrastiveVirtualStaining’s past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2025
  • MeisenMeister Public

    Winning Solution of the ODELIA Breast MRI Challenge 2025

    MIC-DKFZ/MeisenMeister’s past year of commit activity
    1 Apache-2.0 0 1 0 Updated Oct 31, 2025
  • dynamic-network-architectures Public
    MIC-DKFZ/dynamic-network-architectures’s past year of commit activity
    Python 132 Apache-2.0 52 5 5 Updated Oct 29, 2025
  • nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

    MIC-DKFZ/nnDetection’s past year of commit activity
    Python 613 Apache-2.0 116 26 2 Updated Oct 27, 2025
  • RPTK Public

    The Radiomics Processing Toolkit (RPTK) is an automated self-optimizing Framework which can be used as a task-agnostic pipeline to predict radiomics-based biomarkers for any binary classification problem.

    MIC-DKFZ/RPTK’s past year of commit activity
    Python 6 EUPL-1.2 2 0 0 Updated Oct 24, 2025
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 313 Apache-2.0 33 16 1 Updated Oct 23, 2025
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 7,574 Apache-2.0 2,204 341 (1 issue needs help) 27 Updated Oct 23, 2025
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