This repository contains the source code associated with the manuscript
Gaimann, Nguyen, Desponds, Mayer: Early life imprints the hierarchy of T cell clone sizes, eLife, 2020
It allows reproduction of the statistical analyses and numerical results reported in the manuscript.
For a number of figures final assembly and cosmetic changes were done in inkscape as a postprocessing step. In these cases the figures will not be reproduced precisely. To help reuse the final edited figures are provided in png/svg format.
The code uses Python 3.6+.
A number of standard scientific python packages are needed for the numerical simulations and visualizations. An easy way to install all of these is to install a Python distribution such as Anaconda.
Additionally the code also relies on the following package:
If you run into any difficulties running the code, please contact us at [email protected].
The source code is freely available under an MIT license. The plots are licensed under a Creative Commons attributions license (CC-BY).