Collection of bioinformatics training materials

gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function

pratrical crash course on pytorch by reproducing some published biology-related deep-learning models

Single cell proteomics data processing

Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data

An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics

Single-file quality control prototyping pipeline for diverse mass spectrometry workflows.

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of prot…

Code-base for GigaTIME

Production-ready GWAS pipeline for discovering disease-associated genetic variants. Features automated QC, population stratification correction (PCA/IBD), chi-square and logistic regression associa…

Creating beautiful plots of data maps

R-Shiny GUI integrated with the MSstats package family

A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.

Software to convert multidimensional MS data from files in proprietary vendor formats to HDF5 format in the simple MZA data structure.

Toolbox for biostatistics and clinical data analysis in R. Developed by the biostatistics team at Laboratorios Sophia S.A. de C.V.

LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for Robust Differential Expression Analysis

Mining multi-omics relationship networks from literature and databases

A multimodal, agentic AI framework that captures and shares practical expertise by linking written instructions to real-world laboratory work. It uses video analysis to automate documentation and p…

Script performing classification-based modeling or prediction from genomic data

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25

Wireflow - user flow chart real-time collaborative tool

RNA-seq analysis pipeline for detection of gene-fusions

monospace typeface designed for symbol-rich programming