bdm

Bayesian biomass dynamic model for estimation of population status from catch and abundance data

Instructions

First, install the 'rstan' and 'devtools' packages from CRAN:

# Install packages
install.packages("devtools")
install.packages("rstan")

Then install 'bdm' directly from GitHub:

# devtools command to get bdm from GitHub
devtools::install_github("cttedwards/bdm")

The life history module 'lhm' is required to estimate the intrinsic growth rate:

# devtools command to get lhm from GitHub
devtools::install_github("cttedwards/lhm")

Name		Name	Last commit message	Last commit date
Latest commit History 315 Commits
R		R
data-raw		data-raw
data		data
man		man
tests		tests
vignettes		vignettes
.gitignore		.gitignore
DESCRIPTION		DESCRIPTION
Makefile		Makefile
NAMESPACE		NAMESPACE
README.md		README.md
debug_bdm.R		debug_bdm.R
version_update.R		version_update.R