mgalardini
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mastodon_digest Public
Forked from mauforonda/mastodon_digestA Python script that aggregates recent popular tweets from your Mastodon timeline
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 10, 2025 -
pyseer Public
SEER, reimplemented in python 🐍🔮
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 14, 2023 -
2022_ecoli_commensal Public
Forked from jburgaya/2022_ecoli_commensalBacterial wg-GWAS for the detection of E. coli BSI and commensal genetic determinants
Jupyter Notebook MIT License UpdatedMay 12, 2023 -
abstractFFT Public
"Abstract" paintings using Fourier transform tricks 🎨🖥️
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panaroo Public
Forked from gtonkinhill/panarooAn updated pipeline for pangenome investigation
Python MIT License UpdatedOct 22, 2021 -
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2018koyeast Public
Analysis of multiple yeast strains whole-genome knockout libraries 🔬📈
Jupyter Notebook Apache License 2.0 UpdatedFeb 19, 2021 -
2018_ecoli_pathogenicity Public
Highlight genetic determinants of E. coli's pathogenicity
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ecopredict Public
Code for growth phenotypes prediction in E. coli and manuscript figures generation
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pdb2uniprot Public
Convert PDB residues to their Uniprot equivalents
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glmnet_python Public
Forked from johnlees/glmnet_pythonJupyter Notebook GNU General Public License v2.0 UpdatedNov 27, 2019 -
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evolver-electron Public
Forked from FYNCH-BIO/evolver-electronJavaScript MIT License UpdatedApr 15, 2019 -
project-template Public
Template for a computational project using python, snakemake and jupyter notebooks
Smarty Apache License 2.0 UpdatedApr 1, 2019 -
2019_ecoli_trascriptome Public
Analysis of E. coli transcriptomics data 📝📊
Jupyter Notebook Apache License 2.0 UpdatedFeb 26, 2019 -
python_plotting_snippets Public
Tips and tricks for plotting in python
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chembl_tools Public
Small scripts to make the most of the ChEMBL API
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screenings Public
Chemical genetic data analysis pipeline
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Roary Public
Forked from sanger-pathogens/RoaryRapid large-scale prokaryote pan genome analysis
Perl Other UpdatedMar 13, 2018 -
2017_python_course Public
Intermediate python programming course 🐍🏫
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reads2transcriptome Public
From second generation sequencing reads to base counts
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2016_python_course Public
Material for the EBI predocs course on python
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pangenome_variation Public
Run several analysis on bacterial genomes
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combat.py Public
Forked from brentp/combat.pypython / numpy / pandas / patsy version of ComBat for removing batch effects.
Python MIT License UpdatedAug 21, 2017 -
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Iris Public
Forked from critichu/IrisIris: expanding the palette of microbial phenotypic readouts
Java GNU General Public License v2.0 UpdatedDec 20, 2016 -
seer_pipeline Public
Run SEER with fewer headaches
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ncbi-genome-download Public
Forked from kblin/ncbi-genome-downloadScripts to download genomes from the NCBI FTP servers