Fast interval intersection library

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

Publish Rust crates from CI with a Release PR.

Iterate over minimizers of a DNA sequence

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

Display and control your Android device

Simple and transparent support for compressed files.

A fully featured, powerful async Python library for the Twitch API and EventSub.

A C++ API to read and write kff files

Contains the description of a file format to store kmers and associated values

A Rust API to read and write kff files

Grep for FASTQ files

Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

One-click anonymizer of tweets before sharing a screenshot.

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

Randomly subsample sequencing reads or alignments

A bit-packed k-mer representation (and relevant utilities) for rust

Bioinformatics I/O libraries in Rust

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

Rust in bioinformatics and computational biology

GFA visualizer, GPU-accelerated using Vulkan

GFA parser in Rust

This is the development home of the workflow management system Snakemake. For general information, see

Fast FASTX parsing and k-mer methods in Rust

GNU/Linux software to (hopefully) give TAS tools to games