Skip to content
Open
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Added prov_env message
  • Loading branch information
Ryan Cali authored and Ryan Cali committed Nov 27, 2022
commit 419dadada332efc20394b86505c25c4accee4112
31 changes: 29 additions & 2 deletions pydra/engine/audit.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,8 @@
from ..utils.messenger import send_message, make_message, gen_uuid, now, AuditFlag
from .helpers import ensure_list, gather_runtime_info, hash_file
from .specs import attr_fields, File, Directory

import subprocess as sp
import platform

class Audit:
"""Handle provenance tracking and resource utilization."""
Expand Down Expand Up @@ -171,7 +172,7 @@ def audit_check(self, flag):
return self.audit_flags & flag

def audit_task(self, task):
import subprocess as sp


label = task.name

Expand Down Expand Up @@ -221,3 +222,29 @@ def audit_task(self, task):
}

self.audit_message(start_message, AuditFlag.PROV)

env_id = f"uid:{gen_uuid()}"
os_plat = str(platform.platform())
env_vars = str(os.environ)
# check if using conda environment
if "CONDA_PREFIX" in os.environ:
conda_env_path = str(os.environ["CONDA_PREFIX"])
conda_env_name = conda_env_path.split("/")[-1]

env_message = {
"@id": env_id,
"Label": "Conda environment: " + conda_env_name,
"EnvVars": env_vars,
"OperatingSystem": os_plat,
"Dependencies": "test"
}
else:
env_message = {
"@id": env_id,
"Label": None,
"EnvVars": env_vars,
"OperatingSystem": os_plat,
"Dependencies": "test"
}
# Fetch env info
self.audit_message(env_message, AuditFlag.PROV)