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    12 repositories

    • lab-website

      Public
      Source code for rkjcollab website
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •417•0•0•1•Updated Nov 17, 2025Nov 17, 2025

    • tools

      Public
      Pipeline to run liftover using CrossMap - in development. Currently can do hg38 to hg19 for PLINK1.9 or bed input.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • topmed_imputation

      Public archive
      Scripts for Biodata Catalyst TOPMed imputation, adapted from Michelle Daya.
      Shell
      •7•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • imputation

      Public
      Shell
      •1•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • local_ancestry_analysis

      Public
      Tools for local ancestry calling by RFMix, admixture mapping, and LAAA fine mapping.
      Shell
      •3•1•0•0•Updated Oct 28, 2025Oct 28, 2025

    • t1grs

      Public
      T1GRS - T1D genetic risk prediction
      Python
      •
      Other
      •2•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • extract-TOPMed-Michigan-HLA

      Public
      Shell
      •
      Other
      •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • metaboxcan_copdgene

      Public
      Code used to predict metabolomics in COPDGene using models from Metaboxcan for collaboration.
      R
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • templates

      Public
      Rmd templates for reports
      CSS
      •0•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • tutorials

      Public
      MIT License
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • wall-of-software

      Public
      A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
      JavaScript
      •14•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • ponderosa_bags

      Public
      Code used to run Ponderosa on BAGS WGS data for collaboration.
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 9, 2024Dec 9, 2024