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1.4.1

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1.4.1 (January 27, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.1?closed=1

* FIX: DataSink to S3 buckets (nipy#3130)
* FIX: improve version checking for nodes of workflows (nipy#3152)
* FIX: mapnode to generate result file when crashes in single node mode (nipy#3143)
* FIX: Can't seem to import workflows from niflows in CircleCI (nipy#3134)
* FIX: Repair aftermath of docs refactor (nipy#3133)
* FIX: change ANTS number_of_time_steps from Float to Int (nipy#3118)
* DOC: Revise generation of examples to work in RTD (nipy#3132)
* DOC: Bring examples generation back to ``doc/conf.py`` (nipy#3131)
* DOC: Documentation overhaul (nipy#3124)
* DOC: Deep revision of documentation building (nipy#3120)
* DOC: Deduplicate code for Sphinx's APIdoc generation (nipy#3119)
* MNT: Update requirements.txt post-1.4 (nipy#3153)

1.3.2

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effigies Chris Markiewicz
1.3.2 (January 06, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/36?closed=1

* FIX: Handle crashes of single-element iterables in MapNodes (nipy#3144)

1.4.0

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effigies Chris Markiewicz
1.4.0 (December 20, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/37?closed=1

* FIX: Mark strings containing regex escapes as raw (nipy#3106)
* ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (nipy#3099)
* ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (nipy#3073)
* ENH: Add options and outputs to ``fsl.Eddy`` interface (nipy#3034)
* ENH: Add skull_file output to fsl.BET interface (nipy#3095)
* RF: Drop various remaining compatibilities for Python < 3.5 (nipy#2831)
* DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (nipy#3115)
* DOC: Miss underline before cmd in example code (nipy#3107)
* STY: Black (nipy#3096)
* MNT: Set junit_family to suppress pytest warning (nipy#3111)
* MNT: Fix Dorota Jarecka ORCID (nipy#3100)
* MNT: Drop Python 2 support (nipy#2654)

1.3.1

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effigies Chris Markiewicz
1.3.1 (November 12, 2019)

* FIX: Restore checking traits or bunch (nipy#3094)

1.3.0

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effigies Chris Markiewicz
1.3.0 (November 11, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1

* FIX: Fixed typo in QwarpInputSpec Trait description (nipy#3079)
* FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (nipy#3071)
* FIX: Remove asynchronous chdir callback (nipy#3060)
* FIX: Minimize scope for directory changes while loading results file (nipy#3061)
* ENH: Minimize the number of calls to ``_load_results`` when populating inputs (nipy#3075)
* ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (nipy#3089)
* ENH: Add "ExportFile" interface as simple alternative to "DataSink" (nipy#3054)
* ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (nipy#3072)
* ENH: Add precommit information for contributors and pre-commit style (nipy#3063)
* ENH: Delay etelemetry for non-interactive sessions, report bad versions (nipy#3049)
* ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (nipy#30)
* RF: Provide functions to augment old Path.mkdir, Path.resolve methods (nipy#3050)
* RF: Redirect nipype.workflows to niflow.nipype1.workflows (nipy#3067)
* TST: Skip dcm2niix test if data fails to download (nipy#3059)
* TST: dcm2niix test fix (nipy#3058)
* MAINT: Drop Python 3.4 support (nipy#3062)
* CI: ``make specs`` on Travis (nipy#3066)

1.3.0rc1

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effigies Chris Markiewicz
1.3.0-rc1

Release candidate for Nipype 1.3.0, released off-schedule to enable
testing and allow downstream projects to move off of 1.2.3.

Final release scheduled for Monday, October 28.

Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1

* FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (nipy#3071)
* FIX: Remove asynchronous chdir callback (nipy#3060)
* FIX: Minimize scope for directory changes while loading results file (nipy#3061)
* ENH: Add precommit information for contributors and pre-commit style (nipy#3063)
* ENH: Delay etelemetry for non-interactive sessions, report bad versions (nipy#3049)
* ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (nipy#30)
* RF: Provide functions to augment old Path.mkdir, Path.resolve methods (nipy#3050)
* RF: Redirect nipype.workflows to niflow.nipype1.workflows (nipy#3067)
* TST: Skip dcm2niix test if data fails to download (nipy#3059)
* TST: dcm2niix test fix (nipy#3058)
* MAINT: Drop Python 3.4 support (nipy#3062)
* CI: ``make specs`` on Travis (nipy#3066)

1.2.3

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effigies Chris Markiewicz
1.2.3 (September 23, 2019)

Python 1.2.3 will be the last version to support Python 3.4.

Full changelog: https://github.com/nipy/nipype/milestone/35?closed=1

* FIX: Patch Path.mkdir for Python 2 (nipy#3037)
* FIX: Drop deprecated message argument to ``FileNotFoundError`` (nipy#3035)
* FIX: Handle NIFTI extensions in ``afni.Qwarp`` (nipy#3028)
* FIX: Disallow returning ``None`` in ``pipeline.utils.load_resultfile`` (nipy#3023)
* ENH: Allow afni.CatMatvec to accept empty string opkeys (nipy#2943)
* ENH: Add ``mrrtrix3.MRResize`` interface (nipy#3031)
* ENH: Add version check / telemetry to Nipype (nipy#3027)
* ENH: Update MCFLIRT outputs for FSL 6+ (nipy#3029)
* ENH: Lightweight node cache checking (nipy#3026)
* ENH: Avoid loading result from file when writing reports (nipy#3024)
* ENH: replace portalocker with filelock (nipy#3025)
* MAINT: Set minimum yapf for `checkspecs` to 0.27 (nipy#3033)

1.2.2

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effigies Chris Markiewicz
1.2.2 (September 07, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/33?closed=1

* FIX: Ensure ``loadpkl`` returns a not None value (nipy#3020)
* FIX: ``loadpkl`` failed when pklz file contained versioning info (nipy#3017)
* FIX: Update mne.WatershedBEM command line (nipy#3007)
* FIX: Specify correct stop criterion flag in PETPVC (nipy#3010)
* ENH: add interface for AFNI 3dTsmooth (nipy#2948)
* ENH: Additional arguments to ANTs N4BiasFieldCorrection (nipy#3012)
* ENH: Add ``--rescale-intensities`` and name_source to N4BiasFieldCorrection (nipy#3011)
* ENH: Add index_mask_file input to ImageStats (nipy#3005)
* RF: Remove versioning from loadpkl (nipy#3019)
* MAINT: Add ``python_requires`` to package metadata (nipy#3006)

1.2.1

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effigies Chris Markiewicz
1.2.1 (August 19, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/32?closed=1

  * FIX: Resolve/rebase paths from/to results files (nipy#2971)
  * FIX: Use ``load_resultfile`` when loading a results pickle (nipy#2985)
  * FIX: Incorrect extension identified when checking ``File`` traits (nipy#2987)
  * FIX: Correctly pickle ``OuputMultiObject`` traits (nipy#2983)
  * FIX: Improve output handling in DWIDenoise and DWIBiasCorrect (nipy#2978)
  * FIX: Docker build (nipy#2963)
  * FIX: Remove '=' signs from EddyQuad argument specifications (nipy#2941)
  * FIX: Set input model to bedpostx for camino.TrackBedpostxProba (nipy#2947)
  * FIX: Allow ``max_sh``not to be set (auto mode) (nipy#2940)
  * ENH: Update mrtrix reconst.py EstimateFOD max_sh to be able to accept list (nipy#2990)
  * ENH: Let ``indirectory`` handle ``nipype.utils.filemanip.Path`` (nipy#2989)
  * ENH: Add resolve/rebase ``BasePath`` traits methods & tests (nipy#2970)
  * ENH: Modify ``Directory`` and ``File`` traits to get along with pathlib (nipy#2962)
  * REF: Update nipype2boutiques script (nipy#2894)
  * TST: Parametrize JoinNode expansion tests over config ``needed_outputs`` (nipy#2981)
  * MAINT: Pin lxml<4.4.0 for Python 3.4 (nipy#2980)
  * MAINT: Refactor ``aggregate_outputs`` for readability (nipy#2969)
  * MAINT: Bump neurodocker version (nipy#2965)
  * MAINT: Various minor improvements to complement previous PR (nipy#2964)
  * MAINT: Sort dependencies alphabetically (nipy#2961)

1.2.0

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effigies Chris Markiewicz
1.2.0 (May 09, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/31?closed=1

* FIX: Parsing of filename in AlignEpiAnatPy when filename does not have + (nipy#2909)
* FIX: Import nibabel reorientation bug fix (nipy#2912)
* FIX: Update FNIRT outputs for warped_file log_file to include cwd (nipy#2900)
* FIX: Sort conditions in bids_gen_info to ensure consistent order (nipy#2867)
* FIX: Some traits-5.0.0 don't work with Python 2.7 (nipy#1)
* ENH: CompCor enhancement (nipy#2878)
* ENH: Do not override caught exceptions with FileNotFoundError from unfinished hashfile (nipy#2919)
* ENH: More verbose description when a faulty results file is loaded (nipy#2920)
* ENH: Add all DIPY workflows dynamically  (nipy#2905)
* ENH: Add mrdegibbs and dwibiascorrect from mrtrix3 (nipy#2904)
* TEST: Fix CI builds (nipy#2927)
* MAINT: Reduce deprecation warnings (nipy#2903)