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@GlobalPathogenAnalysisService

EIT Global Pathogen Analysis Service

EIT GPAS repositories
README.md

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Welcome to the GPAS code repositories — your launchpad into cutting-edge pathogen analysis.

GPAS CLI Client

The GPAS CLI Client gives you the power of GPAS from your terminal.

  • Run human read removal on FastQ files before upload
  • Upload data directly to EIT GPAS
  • Manage and monitor your analysis batches with ease — download results, track progress, and more

Want to dive in? Install the client from PyPi and start exploring!

Popular repositories Loading

  1. read-it-and-keep read-it-and-keep Public

    Read contamination removal

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  2. gpas-cli gpas-cli Public archive

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  3. gpas-covid-testsets gpas-covid-testsets Public

    A series of SARS-CoV-2 development testsets for the different pipelines available in GPAS

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  4. gpas-uploader gpas-uploader Public archive

    Sequencing data upload client for GPAS users

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  5. gpas-testing gpas-testing Public

    Create perfect FASTQ files for the SARS-CoV-2 WHO lineages for use in testing

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  6. gpas-user-tools gpas-user-tools Public archive

    Collection of tools to help users upload, process and

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