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@k1o0 k1o0 commented Sep 9, 2019

Substantial bug fixes and tests added:

  • patch in alyx-matlab submodule -- 2019-07-25
  • updated Signals performance test 993d906 2019-07-19
  • fixes to tests for the Alyx Panel eb5e9b9 2019-07-19
  • added tests for most used burgbox functions -- 2019-08
  • documentation added for numerous functions 661450, de0dc9 2019-08-11
  • removed +dat/parseAlyxInstance.m 1939b2 2019-08-08
  • fix for large json hardware arrays (issue Hardware JSON files are large #168) 058001
  • fix for checking functions on path in newer versions c4022d 2019-08-09
  • fix for chrono wiringInfo in Timeline fdfe72 2019-08-11
  • fixes to burgbox utils cf3c384, bb5c3f7, 9be079, de0dc92
  • added utility for checking test coverage efa7414 2019-08-08
  • added walkthroughs for parameters and timeline -- 2019-08-14
  • improvements to water expServer calibration function dd0adb7 2019-08-14
  • updates to signals submodule f760e5e 2019-09-03

I aim to merge this on Monday. When I do so I'll remove the readTheDocsFiles directory and update the changelog. Signals submodule needs merging beforehand.

jaib1 and others added 30 commits July 19, 2019 17:10
… in its submodules"

Reverting a commit that should have been to dev_kevin, not to dev
… is missing"

Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.
* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error
@k1o0 k1o0 requested a review from jkbhagatio September 9, 2019 11:22
@jkbhagatio
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Monday as in today or one week from today?

@k1o0 k1o0 merged commit 4898beb into master Sep 16, 2019
k1o0 added a commit that referenced this pull request Jan 25, 2020
* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>
k1o0 added a commit that referenced this pull request Feb 14, 2020
* HOTFIX updated alyx-matlab submodule

* Scale cleanup (#220)

* #219 fix for scale cleanup on error

* Update to CHANGELOG

* Support for remote error IDs

* Added test for StimulusControl and fixed err id in expServer test

* Mpep bind server test (#209)

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* Assertion added #204

* paths template consistent with new cortexlab servers (#224)

* single-character change to README.md to test if I still have permission to push to dev (hopefully I don't)

* modified paths_template to be consistent with current cortexlab server settings

* Changes to server name vars in paths template

* ExpPanel updates (#221)

* Returned access restriction; started docs; Hiding info fields and comments box; cleaner subclassing

* Rethrow Signals update mismatch as warning, #72

* SqueakExpPanel -> SignalsExpPanel

* Removed code for very specific experiment that is no longer used

* Completed using_ExpPanel docs

* Formatting docs

* Issue #79

* Cleaned up UpdatesFilter

* documentation; changed plot colours

* Signals exp test (#231)

* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>

* Fix for eui.ExpPanel/live input parse error and tests added (#239)

* Fix for eui.ExpPanel/live input parse error and tests added

* Updated CHANGELOG and tests Contents file

* Better handling of ExpDefs; Documentation updates

* Fix for selecting expDef from uigetfile

* Use erase instead of strrep (#238)

* Bug fix for updateParams on edit; update submodules

* Documentation (#237)

* Added troubleshooting to index

* Fixed external links in index

* Updated index version number

* Documented stimulusControllers and typo fix in MockDialog

* Documented tabulateArgs

* README and CONTRIBUTING

* Updated badges

* Ignore todos in html

* Param profiles test (#244)

* tests and documentation for *paramProfile functions; repos created when none exist

* CHANGELOG

* Info label format (#246)

* Added label format option to SignalsExpPanel

* CHANGELOG

* Documentation (#261)

* Typo fix; added acknowledgement; mentioned 2PCs in software req

* Generic paths template

* added more steering wheel setup details

* Merge from master and updates to README, addRigboxPaths

Co-authored-by: Jai Bhagat <[email protected]>
Co-authored-by: Kevin Miller <[email protected]>
k1o0 added a commit that referenced this pull request Jan 3, 2021
* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules
k1o0 added a commit that referenced this pull request Jan 3, 2021
* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>
k1o0 added a commit that referenced this pull request Jan 3, 2021
* HOTFIX updated alyx-matlab submodule

* Scale cleanup (#220)

* #219 fix for scale cleanup on error

* Update to CHANGELOG

* Support for remote error IDs

* Added test for StimulusControl and fixed err id in expServer test

* Mpep bind server test (#209)

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* Assertion added #204

* paths template consistent with new cortexlab servers (#224)

* single-character change to README.md to test if I still have permission to push to dev (hopefully I don't)

* modified paths_template to be consistent with current cortexlab server settings

* Changes to server name vars in paths template

* ExpPanel updates (#221)

* Returned access restriction; started docs; Hiding info fields and comments box; cleaner subclassing

* Rethrow Signals update mismatch as warning, #72

* SqueakExpPanel -> SignalsExpPanel

* Removed code for very specific experiment that is no longer used

* Completed using_ExpPanel docs

* Formatting docs

* Issue #79

* Cleaned up UpdatesFilter

* documentation; changed plot colours

* Signals exp test (#231)

* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>

* Fix for eui.ExpPanel/live input parse error and tests added (#239)

* Fix for eui.ExpPanel/live input parse error and tests added

* Updated CHANGELOG and tests Contents file

* Better handling of ExpDefs; Documentation updates

* Fix for selecting expDef from uigetfile

* Use erase instead of strrep (#238)

* Bug fix for updateParams on edit; update submodules

* Documentation (#237)

* Added troubleshooting to index

* Fixed external links in index

* Updated index version number

* Documented stimulusControllers and typo fix in MockDialog

* Documented tabulateArgs

* README and CONTRIBUTING

* Updated badges

* Ignore todos in html

* Param profiles test (#244)

* tests and documentation for *paramProfile functions; repos created when none exist

* CHANGELOG

* Info label format (#246)

* Added label format option to SignalsExpPanel

* CHANGELOG

* Documentation (#261)

* Typo fix; added acknowledgement; mentioned 2PCs in software req

* Generic paths template

* added more steering wheel setup details

* Merge from master and updates to README, addRigboxPaths

Co-authored-by: Jai Bhagat <[email protected]>
Co-authored-by: Kevin Miller <[email protected]>
k1o0 added a commit that referenced this pull request Jan 4, 2021
* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules
k1o0 added a commit that referenced this pull request Jan 4, 2021
* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>
k1o0 added a commit that referenced this pull request Jan 4, 2021
* HOTFIX updated alyx-matlab submodule

* Scale cleanup (#220)

* #219 fix for scale cleanup on error

* Update to CHANGELOG

* Support for remote error IDs

* Added test for StimulusControl and fixed err id in expServer test

* Mpep bind server test (#209)

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* Assertion added #204

* paths template consistent with new cortexlab servers (#224)

* single-character change to README.md to test if I still have permission to push to dev (hopefully I don't)

* modified paths_template to be consistent with current cortexlab server settings

* Changes to server name vars in paths template

* ExpPanel updates (#221)

* Returned access restriction; started docs; Hiding info fields and comments box; cleaner subclassing

* Rethrow Signals update mismatch as warning, #72

* SqueakExpPanel -> SignalsExpPanel

* Removed code for very specific experiment that is no longer used

* Completed using_ExpPanel docs

* Formatting docs

* Issue #79

* Cleaned up UpdatesFilter

* documentation; changed plot colours

* Signals exp test (#231)

* Tiny changes to appease MATLAB

* Started installation section

* Added matlabdomain extension

* Added infomation for remote location in reposPath

* Started a setup page

* Added parameters walkthrough

* HOTFIX changed Alyx Panel login timer to 90 mins

* 2.3 <- 2.2.1 (#198)

* updated signals submodule

* updated signals submodule (eb71b1f)

* Added test for ensureCell

* Fix'd typo in ensureCell_test

* Future-proofing runall to ignore tests with specific hardware requirements

* Added tests for nop, iff and emptyElems

* Added tests for cellsprintf and num2cellstr; bug fix in num2cellstr

* Submodule update

* mapToCell test

* Removed complete todos

* Added test for dat.expExists

* Restore changes made in commit
247060a

* Expanded test for dispWaterReq

* assert -> verifyMatches

* Added catStructs test

* Added tabulateArgs test

* superSave test added

* added an informative error message in the case that dat.paths is missing

* Attempting to construct a branch that doesn't differ from dev in its submodules

* Revert "Attempting to construct a branch that doesn't differ from dev in its submodules"
Reverting a commit that should have been to dev_kevin, not to dev

* Revert "added an informative error message in the case that dat.paths is missing"
Reverting a commit that should have been to dev_kevin, not to dev
This reverts commit a492bd2.

* Added file package test

* Added test for pick

* Added test for namedArg

* Added varName test

* Added back tolerance change

* Dev kevin (#192)

* added an informative error message when dat.paths is not present

* added an identifier to the error message

* Added warnings and errors to deal with the case that hardware.mat is not found

* fixed identifier

* Changed error identifiers following Miles' suggestion of module:package:function:error

* added more info to error for empty rig

* added more info to no dat.paths error

* Bug fix in namedArg test

* Removed old function -> now a method of Alyx

* Started +fun package test; added fileFunction test

* No longer using 'which' to assert function existence

* Bug fixes for tests

* Bug fix for wiringInfo method

* Added KeyedSeq test

* Added docs for apply and applyForce

* Added loadVar test

* Issue #168

* Added mergeStructs test

* Added performance tests; reorganized tests; updated changelog

* Added parameters walkthrough

* Added timeline walkthrough; bug fix for wiringInfo in Timeline

* added informative error messages to calibration code

* Added documentation for setting up Window; documentation for Window class; Minor bug fixes

* Added a few examples to hardware docs

* Added Viewing model walkthrough and expanded FAQ

* Updated changelog

* Updates to docs

* Added test for +hw/calibrate.m

* deleted exp.construct

* Added documentation for calibration test

* Updated docs; added services guide

* Updates docs

* Fix for Communicator WTF mode; increased test coverage for iff

* Update to changelog and signals

* HOTFIX changed Alyx Panel login timer to 90 mins

* Removed readthedocs, updated submodules

* Update Shields

* HOTFIX: Correct location of docs in README; Stronger wording in install instructions

* Added issue templates (#179)

* Added troubleshooting docs and error id list

* Using signals error handling branch; added troubleshooting doc

* Re-factoring SignalsExp for test subclassing

* Started expServer tests

* Added more tests; bug fix for older versions

* Removed validation functions for old MATLAB versions; added documentation

* More coverage, documentation

* Draws text to screen during calibration #128

* Fix for #4

* Added structAssign test; rewardId tests

* Typo fix in structAssign_test

* Finished tests for expServer

* #156

* Returned listener delete to cleanup

* Stricter tolerance in AlyxPanel_test; bug fix for rounding negative numbers

* Update alyx-matlab submodule

* Minor changes to documentation

* Update CHANGELOG.md

* Added tests for tl.bindMpepServer and pnet spy

* Fixture path fix

* Moved audioDevices default to devices mock

* WIP

* #100 #202

* Updated tests with share fixtures; added pause/resume to SignalsExp; added further tests for SignalsExp; updated tests README; SessionURL fetched from database when necessary

* Added better update of keyboard input signal

* Potential fix for #213

* Updates to submodules

* Update to alyx-matlab

* Context menu for hiding event updates in ExpPenel

* trialCondition index can be reset with signal

* Improvements to test UI

* Documentation

* README for +eui package (#156)

* WIP

* Removed warning from updateLogEntry when Alyx deactivated #202

* Added hide option for ExpPanel; ExpPanel guide in docs

* Added utils; started docs

* #218

* Support for ids in errOnFail

* Removed old commented-out code

* Scale port closed on errors

* Added brief PTB install instructions (#228)

* cleanup

* Documentation; #229

* More flags for addRigboxPaths

* started updating README after Anwar's comments

* updated some instructions in README

* Revert "started updating README after Anwar's comments"

This reverts commit 9f5a456.

* Updated documentation

* Removed PTBDebug call and added example to docstring

* Update to CHANGELOG and signals

* #205 - refactored

* Update to tests

* Warning supression in tests

* CHANGELOG

Co-authored-by: Jai Bhagat <[email protected]>

* Fix for eui.ExpPanel/live input parse error and tests added (#239)

* Fix for eui.ExpPanel/live input parse error and tests added

* Updated CHANGELOG and tests Contents file

* Better handling of ExpDefs; Documentation updates

* Fix for selecting expDef from uigetfile

* Use erase instead of strrep (#238)

* Bug fix for updateParams on edit; update submodules

* Documentation (#237)

* Added troubleshooting to index

* Fixed external links in index

* Updated index version number

* Documented stimulusControllers and typo fix in MockDialog

* Documented tabulateArgs

* README and CONTRIBUTING

* Updated badges

* Ignore todos in html

* Param profiles test (#244)

* tests and documentation for *paramProfile functions; repos created when none exist

* CHANGELOG

* Info label format (#246)

* Added label format option to SignalsExpPanel

* CHANGELOG

* Documentation (#261)

* Typo fix; added acknowledgement; mentioned 2PCs in software req

* Generic paths template

* added more steering wheel setup details

* Merge from master and updates to README, addRigboxPaths

Co-authored-by: Jai Bhagat <[email protected]>
Co-authored-by: Kevin Miller <[email protected]>
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3 participants