Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

LIANA+: an all-in-one framework for cell-cell communication

NicheNet: predict active ligand-target links between interacting cells

Implementation of CellNEST method

Multimodal Spatial-Omics Reveal Co-Evolution of Alveolar Progenitors and Proinflammatory Niches in Progression of Lung Precursor Lesions

[CVPR'23] Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning

Mapping out the coarse-grained connectivity structures of complex manifolds.

The PatchCamelyon (PCam) deep learning classification benchmark.

Comprehensive, open-source Whole Slide Image (WSI) dataset

AI triage for 3D pathology (CVPR-w 2024)

Diffusion-based all-atom protein generative model.

Machine learning project for Virtual Staining which published in Science Advances!

PyTorch implementation of "Image-to-Image Translation Using Conditional Adversarial Networks".

Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms

Official repository for the Boltz biomolecular interaction models

Chai-1, SOTA model for biomolecular structure prediction

A trainable PyTorch reproduction of AlphaFold 3.

Inference code for Llama models

The official Meta Llama 3 GitHub site

An Easy-to-use, Scalable and High-performance RLHF Framework based on Ray (PPO & GRPO & REINFORCE++ & TIS & vLLM & Ray & Dynamic Sampling & Async Agentic RL)

主要记录大语言大模型（LLMs） 算法（应用）工程师相关的知识及面试题