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NF: volume computation function for nifti masks #952

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Merged
merged 9 commits into from
Oct 20, 2020
Merged

NF: volume computation function for nifti masks #952

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d7c7069
Added a volume computation function
JulianKlug Sep 9, 2020
73bff0f
Added commandline and tests for imagestats volume computation
JulianKlug Oct 18, 2020
57f7723
Fix style errors
JulianKlug Oct 18, 2020
e15bb8d
Apply suggestions from code review: Removing unused code
JulianKlug Oct 18, 2020
7412ba9
Apply suggestions from code review: Use header.get_zooms instead of h…
JulianKlug Oct 18, 2020
d357eae
Split Mask_volume into a function for voxels and a function for volum…
JulianKlug Oct 18, 2020
93532de
Fix failing docstring
JulianKlug Oct 19, 2020
2331e9d
Apply suggestions from code review
JulianKlug Oct 19, 2020
35beaba
Style issues, use capsys
JulianKlug Oct 19, 2020
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Fix failing docstring
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@JulianKlug
JulianKlug committed Oct 19, 2020
commit 93532dedbb547597bbc29444bd67e5068b5a9752
3 changes: 2 additions & 1 deletion nibabel/imagestats.py
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Expand Up @@ -46,10 +46,11 @@ def mask_volume(img):

Examples
--------
>>> import numpy as np
>>> import nibabel as nb
>>> mask_data = np.zeros((20, 20, 20), dtype='u1')
>>> mask_data[5:15, 5:15, 5:15] = 1
>>> nb.imagestats.mask_volume(nb.Nifti1Image(mask_data, np.eye(4))
>>> nb.imagestats.mask_volume(nb.Nifti1Image(mask_data, np.eye(4)))
1000.0
"""
if not spatial_axes_first(img):
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