Tags: pakux/nipype
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1.5.1 (August 16, 2020) Bug-fix release in the 1.5.x series. This release includes small updates to ANTs utilities that lie somewhere between bug fixes and enhancements. (`Full changelog <https://github.com/nipy/nipype/milestone/1.5.1?closed=1>`__) * FIX: Warn for min/max_ver traits when tool version can't be parsed (nipy#3241) * FIX: Serialize all interface arguments when exporting workflows (nipy#3240) * FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (nipy#3237) * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236) * DOC: Skip BIDSDataGrabber doctest if pybids is missing (nipy#3224)
1.5.0 (June 03, 2020) New feature release in the 1.5.x series. In this release, the example scripts have been split out into their own package: `niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__. (`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__) * FIX: volterra_expansion_order documentation error (nipy#3213) * FIX: BET incorrect output paths (nipy#3214) * FIX: Terminal output in ``report.rst`` spreads one line per character (nipy#3220) * FIX: Allow parsing freesurfer 7 version string (nipy#3216) * FIX: Use PackageInfo to get NiftyReg version (nipy#3194) * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188) * FIX: ANTs' tools maintenance overhaul (nipy#3180) * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182) * FIX: FSL model.py make multiple F-tests (nipy#3166) * ENH: Restore ants.legacy interfaces (nipy#3222) * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (nipy#3210) * ENH: SPM NewSegment multi-channel segmentation (nipy#3162) * ENH: Add reverse-ordered transform lists to ants.Registration outputs (nipy#3192) * ENH: Improve workflow connect performance (nipy#3184) * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176) * ENH: Detect values for EulerNumber interface (nipy#3173) * ENH: Remove examples from repository (nipy#3172) * TEST: Clean up tests (nipy#3195) * TEST: Mock terminal output before testing changing default value (nipy#3193) * REF: make invocations of python and pytest consistent with the one used/desired python (nipy#3208) * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177) * REF: Removed all uses of numpy_mmap (nipy#3121) * DOC: Sphinx 3 compatibility (nipy#3206) * DOC: Update links, typos in contributing guide (nipy#3160) * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041) * DOC: Updated .zenodo.json file (nipy#3167) * DOC: Update .zenodo.json (nipy#3165) * MNT: Permit recent nilearns (nipy#2841) * MNT: Test Python 3.8 (nipy#3154) * MNT: Restore ReadTheDocs (nipy#3207) * MNT: Update Zenodo ordering based on commit count (nipy#3169)
1.5.0-rc1 Release candidate for the new feature release in the 1.5.x series. In this release, the example scripts have been split out into their own package: `niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__. (`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__) * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188) * FIX: ANTs' tools maintenance overhaul (nipy#3180) * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182) * FIX: FSL model.py make multiple F-tests (nipy#3166) * ENH: Improve workflow connect performance (nipy#3184) * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176) * ENH: Detect values for EulerNumber interface (nipy#3173) * ENH: Remove examples from repository (nipy#3172) * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177) * REF: Removed all uses of numpy_mmap (nipy#3121) * DOC: Update links, typos in contributing guide (nipy#3160) * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041) * DOC: Updated .zenodo.json file (nipy#3167) * DOC: Update .zenodo.json (nipy#3165) * MNT: Update Zenodo ordering based on commit count (nipy#3169)
1.4.2 (February 14, 2020) Full changelog: https://github.com/nipy/nipype/milestone/1.4.2?closed=1 * FIX: Allow ``fsl.MultipleRegressDesign`` to create multiple F-tests (nipy#3166) * FIX: Reliably parse SGE job IDs in the presence of warnings (nipy#3168) * FIX: Move TraitType import, handle API change for NoDefaultSpecified (nipy#3159)
1.4.1 (January 27, 2020) Full changelog: https://github.com/nipy/nipype/milestone/1.4.1?closed=1 * FIX: DataSink to S3 buckets (nipy#3130) * FIX: improve version checking for nodes of workflows (nipy#3152) * FIX: mapnode to generate result file when crashes in single node mode (nipy#3143) * FIX: Can't seem to import workflows from niflows in CircleCI (nipy#3134) * FIX: Repair aftermath of docs refactor (nipy#3133) * FIX: change ANTS number_of_time_steps from Float to Int (nipy#3118) * DOC: Revise generation of examples to work in RTD (nipy#3132) * DOC: Bring examples generation back to ``doc/conf.py`` (nipy#3131) * DOC: Documentation overhaul (nipy#3124) * DOC: Deep revision of documentation building (nipy#3120) * DOC: Deduplicate code for Sphinx's APIdoc generation (nipy#3119) * MNT: Update requirements.txt post-1.4 (nipy#3153)
1.4.0 (December 20, 2019) Full changelog: https://github.com/nipy/nipype/milestone/37?closed=1 * FIX: Mark strings containing regex escapes as raw (nipy#3106) * ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (nipy#3099) * ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (nipy#3073) * ENH: Add options and outputs to ``fsl.Eddy`` interface (nipy#3034) * ENH: Add skull_file output to fsl.BET interface (nipy#3095) * RF: Drop various remaining compatibilities for Python < 3.5 (nipy#2831) * DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (nipy#3115) * DOC: Miss underline before cmd in example code (nipy#3107) * STY: Black (nipy#3096) * MNT: Set junit_family to suppress pytest warning (nipy#3111) * MNT: Fix Dorota Jarecka ORCID (nipy#3100) * MNT: Drop Python 2 support (nipy#2654)
1.3.0 (November 11, 2019) Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1 * FIX: Fixed typo in QwarpInputSpec Trait description (nipy#3079) * FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (nipy#3071) * FIX: Remove asynchronous chdir callback (nipy#3060) * FIX: Minimize scope for directory changes while loading results file (nipy#3061) * ENH: Minimize the number of calls to ``_load_results`` when populating inputs (nipy#3075) * ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (nipy#3089) * ENH: Add "ExportFile" interface as simple alternative to "DataSink" (nipy#3054) * ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (nipy#3072) * ENH: Add precommit information for contributors and pre-commit style (nipy#3063) * ENH: Delay etelemetry for non-interactive sessions, report bad versions (nipy#3049) * ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (nipy#30) * RF: Provide functions to augment old Path.mkdir, Path.resolve methods (nipy#3050) * RF: Redirect nipype.workflows to niflow.nipype1.workflows (nipy#3067) * TST: Skip dcm2niix test if data fails to download (nipy#3059) * TST: dcm2niix test fix (nipy#3058) * MAINT: Drop Python 3.4 support (nipy#3062) * CI: ``make specs`` on Travis (nipy#3066)
1.3.0-rc1 Release candidate for Nipype 1.3.0, released off-schedule to enable testing and allow downstream projects to move off of 1.2.3. Final release scheduled for Monday, October 28. Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1 * FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (nipy#3071) * FIX: Remove asynchronous chdir callback (nipy#3060) * FIX: Minimize scope for directory changes while loading results file (nipy#3061) * ENH: Add precommit information for contributors and pre-commit style (nipy#3063) * ENH: Delay etelemetry for non-interactive sessions, report bad versions (nipy#3049) * ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (nipy#30) * RF: Provide functions to augment old Path.mkdir, Path.resolve methods (nipy#3050) * RF: Redirect nipype.workflows to niflow.nipype1.workflows (nipy#3067) * TST: Skip dcm2niix test if data fails to download (nipy#3059) * TST: dcm2niix test fix (nipy#3058) * MAINT: Drop Python 3.4 support (nipy#3062) * CI: ``make specs`` on Travis (nipy#3066)
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