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Merged
merged 12 commits into from
May 5, 2020
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Closes #3051 - logp numpy array input fixed #3836

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6ae7f20
Closes #3051 - logp numpy array input- fixed
Ahanmr Mar 18, 2020
9418001
Merge pull request #1 from Ahanmr/Ahanmr-pymc3-contrib
Ahanmr Mar 18, 2020
7420495
Closes #3051 - Allows numpy array input to logp
Ahanmr Mar 18, 2020
9df27b3
fixes #3051
Ahanmr Mar 18, 2020
1d53dcf
Fixes #3051
Ahanmr Mar 18, 2020
4a8eb5e
updated RELEASE-NOTES.md
Ahanmr Mar 19, 2020
03a0619
Merge pull request #2 from Ahanmr/release-notes
Ahanmr Mar 19, 2020
a20c453
Merge branch 'master' into HEAD
michaelosthege May 4, 2020
9002e41
directly use floatX
michaelosthege May 4, 2020
7f3b596
mention #3836
michaelosthege May 4, 2020
27da5c7
move all deprecations into their own chapter, as done in previous rel…
michaelosthege May 4, 2020
46f0fb0
add regression test
michaelosthege May 5, 2020
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move all deprecations into their own chapter, as done in previous rel… 
…eases
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michaelosthege committed May 4, 2020
commit 27da5c758ed754c2c183b5db6f4f77d98e7a99c9
14 changes: 7 additions & 7 deletions RELEASE-NOTES.md
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- `pm.LKJCholeskyCov` now automatically computes and returns the unpacked Cholesky decomposition, the correlations and the standard deviations of the covariance matrix (see [#3881](https://github.com/pymc-devs/pymc3/pull/3881)).

### Maintenance
- Remove `sample_ppc` and `sample_ppc_w` that were deprecated in 3.6.
- Tuning results no longer leak into sequentially sampled `Metropolis` chains (see #3733 and #3796).
- Deprecated `sd` in version 3.7 has been replaced by `sigma` now raises `DeprecationWarning` on using `sd` in continuous, mixed and timeseries distributions. (see #3837 and #3688).
- We'll deprecate the `Text` and `SQLite` backends and the `save_trace`/`load_trace` functions, since this is now done with ArviZ. (see [#3902](https://github.com/pymc-devs/pymc3/pull/3902))
- In named models, `pm.Data` objects now get model-relative names (see [#3843](https://github.com/pymc-devs/pymc3/pull/3843)).
- `pm.sample` now takes 1000 draws and 1000 tuning samples by default, instead of 500 previously (see [#3855](https://github.com/pymc-devs/pymc3/pull/3855)).
- Dropped some deprecated kwargs and functions (see [#3906](https://github.com/pymc-devs/pymc3/pull/3906))
- Dropped the outdated 'nuts' initialization method for `pm.sample` (see [#3863](https://github.com/pymc-devs/pymc3/pull/3863)).
- Moved argument division out of `NegativeBinomial` `random` method. Fixes [#3864](https://github.com/pymc-devs/pymc3/issues/3864) in the style of [#3509](https://github.com/pymc-devs/pymc3/pull/3509).
- The Dirichlet distribution now raises a ValueError when it's initialized with <= 0 values (see [#3853](https://github.com/pymc-devs/pymc3/pull/3853)).
- Dtype bugfix in `MvNormal` and `MvStudentT` (see [3836](https://github.com/pymc-devs/pymc3/pull/3836))
- End of sampling report now uses `arviz.InferenceData` internally and avoids storing
pointwise log likelihood (see [#3883](https://github.com/pymc-devs/pymc3/pull/3883))

### Deprecation
- Deprecated `sd` in version 3.7 has been replaced by `sigma` now raises DepreciationWarning on using `sg` in continuous, mixed and timeseries distributions. (see #3837 and #3688).
### Deprecations
- Remove `sample_ppc` and `sample_ppc_w` that were deprecated in 3.6.
- Deprecated `sd` in version 3.7 has been replaced by `sigma` now raises `DeprecationWarning` on using `sd` in continuous, mixed and timeseries distributions. (see [#3837](https://github.com/pymc-devs/pymc3/pull/3837) and [#3688](https://github.com/pymc-devs/pymc3/issues/3688)).
- We'll deprecate the `Text` and `SQLite` backends and the `save_trace`/`load_trace` functions, since this is now done with ArviZ. (see [#3902](https://github.com/pymc-devs/pymc3/pull/3902))
- Dropped some deprecated kwargs and functions (see [#3906](https://github.com/pymc-devs/pymc3/pull/3906))
- Dropped the outdated 'nuts' initialization method for `pm.sample` (see [#3863](https://github.com/pymc-devs/pymc3/pull/3863)).


## PyMC3 3.8 (November 29 2019)

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