robnewman
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Spec-Driven Development of the Seqera Benchling POC integration
MIT License UpdatedNov 25, 2025 -
stress-test-datasets-staging Public
Stress test multiple datasets across organizations and workspaces and
Python MIT License UpdatedOct 31, 2025 -
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benchling-seqera-poc Public
POC to add a Seqera Platform centric app to Benchling via Connect
JavaScript MIT License UpdatedAug 21, 2025 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedMay 27, 2025 -
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rnaseq-nf Public
Forked from nextflow-io/rnaseq-nfA proof of concept of RNAseq pipeline
Nextflow Mozilla Public License 2.0 UpdatedMar 25, 2025 -
etl-airflow-s3 Public
ETL of newspaper article keywords using Apache Airflow, Newspaper3k, Quilt T4 and AWS S3
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bases2fastq-nf Public
Forked from Elembio/bases2fastq-nfBases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.
Nextflow Apache License 2.0 UpdatedJan 9, 2025 -
quilt Public
Notebooks with example code for specific Quilt data repositories
Jupyter Notebook UpdatedJan 8, 2025 -
ds-custom-containers Public
Example custom containers for RStudio, Jupyter, etc
Dockerfile MIT License UpdatedNov 6, 2024 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedApr 11, 2024 -
nextflow-hello-tags Public
Forked from nextflow-io/helloClassic hello world script in Nextflow language
Nextflow Apache License 2.0 UpdatedJan 4, 2024 -
load-data-studio-spack Public
Example repo for creating a Data Studio environment using the Spack package manager
MIT License UpdatedJan 2, 2024 -
load-data-studio-conda Public
Test repo for loading a Data Studio directly from a Github repo
MIT License UpdatedJan 2, 2024 -
quilt-pagila-data Public
Blog post for comparing performance of Quilt vs. Postgres
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bokeh-test Public
A test of the latest build of Bokeh (0.5.1) to show how autoload_static() fails
Python UpdatedOct 3, 2023 -
nf-hello Public
Forked from nextflow-io/nf-helloNextflow plugin implementation skeleton
Groovy Apache License 2.0 UpdatedJul 18, 2023 -
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node-knockout-translation Public
Example SPA that supports multiple languages
JavaScript MIT License UpdatedJul 21, 2021 -
knowledge-base Public archive
Forked from senzing-garage/knowledge-baseHOWTOs, tasks, explanations, and more knowledge.
Apache License 2.0 UpdatedJan 30, 2019 -
django-helpdesk Public
Forked from django-helpdesk/django-helpdeskA Django application to manage tickets for an internal helpdesk. Formerly known as Jutda Helpdesk.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 10, 2018