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Prediction of bacteriophage lysins in metagenomic datasets.
A next.js web application that integrates AI capabilities with draw.io diagrams. This app allows you to create, modify, and enhance diagrams through natural language commands and AI-assisted visual…
A set of ready to use scientific skills for Claude
protein structure generation with sparse all-atom denoising models
An efficient protein structural alignment search algorithm
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Updated Sep 17, 2025
Official codebase for the paper "Presenting a Paper is an Art: Self-Improvement Aesthetic Agents for Academic Presentations"
A generalized computational framework for biomolecular modeling.
Augmented Local MSA Generation for Phage and Viral Proteins using the ColabFold Framework
Genome-scale protein function classification
A virtual lab of LLM agents for science research
E2M converts various file types (doc, docx, epub, html, htm, url, pdf, ppt, pptx, mp3, m4a) into Markdown. It’s easy to install, with dedicated parsers and converters, supporting custom configs. E2…
Determining Membrane Orientation of Transmembrane Proteins
Protein prediction models implemented with Modal
Protein Engineering via Exploration of an Energy Landscape
Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
AlphaFold Meets Flow Matching for Generating Protein Ensembles
Code to compute bulk molecular features from IDR/protein sequences
Fine-tuning Protein Language Models Unlocks the Potential of Underrepresented Viral Proteomes
Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
In silico directed evolution of peptide binders with AlphaFold
This is the portal code for our new article “Unveiling the Evolution of Antimicrobial Peptides in Gut Microbes via Foundation Model-Powered Framework”
Collects software dedicated to predicting specific properties of peptides
Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
Predict AMPs in (meta)genomes and peptides
A listing of software, tools and databases useful for virome analysis