Skip to content
@COMBINE-lab

COMBINE lab

COMputational BIology and Network Evolution lab

Popular repositories Loading

  1. salmon salmon Public

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

    C++ 806 167

  2. alevin-fry alevin-fry Public

    🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

    Rust 183 16

  3. pufferfish pufferfish Public

    An efficient index for the colored, compacted, de Bruijn graph

    C 110 21

  4. RapMap RapMap Public

    Rapid sensitive and accurate read mapping via quasi-mapping

    C++ 89 23

  5. cuttlefish cuttlefish Public

    Building the compacted de Bruijn graph efficiently from references or reads.

    C++ 87 11

  6. oarfish oarfish Public

    long read RNA-seq quantification

    Rust 85 5

Repositories

Showing 10 of 125 repositories

Top languages

Loading…

Most used topics

Loading…