Python library for immune repertoire analysis

Self/non-self discrimination as a statistical problem

Python library for optimizing noisy functions.

Source for lab homepage

Course on Mathematical Modelling in Biomedicine at UCL

Software for Low Energy Electron Diffraction I(E)-spectra analysis

Ecological diversity analysis in python

Python snippets and benchmarks

Source code accompanying the paper "Measures of epitope binding degeneracy from T cell receptor repertoires "

public mise ( http://en.wikipedia.org/wiki/Mise_en_place )

Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax

Source code associated with the paper 'A scaling law in CRISPR repertoire sizes arises from avoidance of autoimmunity'

Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"

Source code accompanying the paper "How a well-adapting immune system remembers"

Source code accompanying the paper "Regulation of T cell expansion by antigen presentation dynamics "

Projected gradient optimization in python

Source code accompanying the paper "Transitions in optimal adaptive strategies for populations in fluctuating environments"

Source code accompanying the paper "How a well-adapted immune system is organized"

Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"